vOTU-052542

Overview

vOTU representative UHGV-0392033

No. of genomes 2

Genome length 41,256 bps

Completeness 100.00% (complete)

Host Gemmiger

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-052542
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00079 › vGENUS-00402 › vSUBGEN-21967 › vOTU-052542
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0392033
BioSample	NA
Genome length	41,256 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	69
CDS density	90.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0392033_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-0392033_1	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0392033_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0392033_2	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0392033_2	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0392033_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0392033_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0392033_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0392033_3	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0392033_3	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0392033_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0392033_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0392033_4	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0392033_4	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0392033_4	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0392033_4	COG	COG5412	Phage-related protein	NA
UHGV-0392033_4	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0392033_5	PHROG	phrog_20920	NA	unknown function
UHGV-0392033_5	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0392033_5	Structural annotation	PF16674	NA	NA
UHGV-0392033_7	PHROG	phrog_18646	NA	unknown function
UHGV-0392033_8	PHROG	phrog_885	major tail protein	tail
UHGV-0392033_8	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0392033_8	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0392033_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0392033_9	Structural annotation	PF11367	NA	NA
UHGV-0392033_10	PHROG	phrog_17977	NA	unknown function
UHGV-0392033_10	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0392033_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0392033_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0392033_12	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0392033_12	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0392033_12	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0392033_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0392033_13	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0392033_13	Structural annotation	PF06810	NA	NA
UHGV-0392033_14	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0392033_14	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0392033_14	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0392033_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0392033_15	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0392033_15	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0392033_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0392033_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0392033_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0392033_18	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0392033_18	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0392033_18	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0392033_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0392033_18	COG	COG2369	NA	NA
UHGV-0392033_18	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0392033_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0392033_19	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0392033_19	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0392033_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0392033_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0392033_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0392033_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0392033_20	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0392033_20	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0392033_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0392033_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0392033_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0392033_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0392033_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0392033_21	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0392033_21	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0392033_21	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0392033_21	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0392033_21	Structural annotation	PF16677	NA	NA
UHGV-0392033_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0392033_22	UniRef90	UniRef90_A0A8J6J9G8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0392033_22	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0392033_22	Pfam	PF07374	NA	DUF1492
UHGV-0392033_22	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0392033_25	PHROG	phrog_16244	NA	unknown function
UHGV-0392033_26	Structural annotation	PF16069, NF040508	NA	NA
UHGV-0392033_27	PHROG	phrog_9958	NA	unknown function
UHGV-0392033_27	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0392033_27	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0392033_27	Structural annotation	PF19789	NA	NA
UHGV-0392033_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0392033_28	UniRef90	UniRef90_R6PFX4	Putative phage reductase	NA
UHGV-0392033_28	eggNOG-mapper	760568.Desku_0566	NA	NA
UHGV-0392033_28	PADLOC	SspD_00001	SspD	SSP
UHGV-0392033_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0392033_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0392033_28	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0392033_33	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0392033_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0392033_33	Structural annotation	PF01381, PF08667, MF_00535, NF041951, NF007408, COG1476, COG3655	NA	NA
UHGV-0392033_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0392033_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0392033_34	UniRef90	UniRef90_A0A3G2R5K0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0392033_34	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0392033_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0392033_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0392033_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0392033_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0392033_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0392033_35	UniRef90	UniRef90_A0A6N8H4T4	Single-stranded DNA-binding protein	NA
UHGV-0392033_35	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0392033_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0392033_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0392033_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0392033_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0392033_35	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0392033_36	PHROG	phrog_9804	NA	unknown function
UHGV-0392033_37	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0392033_37	Pfam	PF19808	NA	DUF6291
UHGV-0392033_37	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0392033_37	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0392033_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0392033_37	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0392033_38	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0392033_38	eggNOG-mapper	1408437.JNJN01000039_gene371	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0392033_38	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0392033_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0392033_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0392033_39	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-0392033_39	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0392033_39	Pfam	PF03837	RecT family	RecT
UHGV-0392033_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0392033_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0392033_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0392033_40	PHROG	phrog_674	NA	unknown function
UHGV-0392033_40	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0392033_40	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0392033_40	Pfam	PF07083	NA	DUF1351
UHGV-0392033_40	Structural annotation	PF07083	NA	NA
UHGV-0392033_42	PHROG	phrog_27197	NA	unknown function
UHGV-0392033_42	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0392033_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0392033_43	PHROG	phrog_4433	NA	unknown function
UHGV-0392033_43	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0392033_43	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0392033_45	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0392033_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0392033_45	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0392033_45	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0392033_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0392033_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0392033_47	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0392033_47	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0392033_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0392033_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0392033_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0392033_52	Structural annotation	PF12688	NA	NA
UHGV-0392033_53	KOfam	K14059	int; integrase	NA
UHGV-0392033_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0392033_53	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0392033_53	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0392033_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0392033_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0392033_53	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0392033_55	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0392033_56	Structural annotation	PF12510	NA	NA
UHGV-0392033_57	PHROG	phrog_20016	NA	unknown function
UHGV-0392033_57	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0392033_57	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0392033_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0392033_58	PHROG	phrog_16490	NA	unknown function
UHGV-0392033_58	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0392033_59	PHROG	phrog_22984	NA	unknown function
UHGV-0392033_60	PHROG	phrog_21718	NA	unknown function
UHGV-0392033_60	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0392033_61	PHROG	phrog_3754	NA	unknown function
UHGV-0392033_61	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0392033_62	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0392033_62	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0392033_62	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0392033_63	PHROG	phrog_13256	NA	unknown function
UHGV-0392033_63	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0392033_64	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0392033_65	KOfam	K07273	acm; lysozyme	NA
UHGV-0392033_65	PHROG	phrog_291	endolysin	lysis
UHGV-0392033_65	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0392033_65	eggNOG-mapper	1408322.JHYK01000015_gene1912	Glycosyl hydrolase, family 25	NA
UHGV-0392033_65	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0392033_65	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0392033_65	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0392033_65	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0392033_67	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0392033_67	Structural annotation	PF10651	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0392033	Yes	41,256 bps	49.34%	100.00%	0.9782
UHGV-1864281	No	41,057 bps	49.42%	99.90%	0.9780