vOTU-054166

Overview

No. of genomes 16

Genome length 41,483 bps

Completeness 100.00% (complete)

Host Bifidobacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-054166
Number of genomes	16
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00107 › vGENUS-05950 › vSUBGEN-03937 › vOTU-054166
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1350163
BioSample	NA
Genome length	41,483 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	57
CDS density	92.58%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1350163_1	KOfam	K14059	int; integrase	NA
UHGV-1350163_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1350163_1	UniRef90	UniRef90_E5Y0A6	Phage integrase	NA
UHGV-1350163_1	eggNOG-mapper	1437609.BCAL_1183	Phage integrase family	NA
UHGV-1350163_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1350163_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1350163_1	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1350163_2	eggNOG-mapper	158787.BSCA_0927	NA	NA
UHGV-1350163_3	UniRef90	UniRef90_A0A4R0UIH7	N-acetyltransferase domain-containing protein	NA
UHGV-1350163_3	eggNOG-mapper	158787.BSCA_0928	NA	NA
UHGV-1350163_3	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1350163_4	UniRef90	UniRef90_UPI001115A6AA	NA	NA
UHGV-1350163_4	eggNOG-mapper	31954.BPSP_0858	NA	NA
UHGV-1350163_5	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-1350163_6	PHROG	phrog_87	metallo-protease	other
UHGV-1350163_6	UniRef90	UniRef90_UPI00069B5048	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1350163_6	eggNOG-mapper	1437610.BREU_1424	NA	NA
UHGV-1350163_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1350163_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1350163_7	eggNOG-mapper	1437608.BBIA_0648	NA	NA
UHGV-1350163_11	UniRef90	UniRef90_UPI000CC69768	NA	NA
UHGV-1350163_11	Structural annotation	PF21633, NF011823, COG3121	NA	NA
UHGV-1350163_13	Structural annotation	PF12750	NA	NA
UHGV-1350163_14	UniRef90	UniRef90_A0A0M3T8I1	30S ribosomal protein S3	NA
UHGV-1350163_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1350163_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1350163_16	UniRef90	UniRef90_A0A0M4LYD1	Single-stranded DNA-binding protein	NA
UHGV-1350163_16	eggNOG-mapper	78345.BMERY_1436	Single-stranded DNA-binding protein	NA
UHGV-1350163_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1350163_16	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1350163_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1350163_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1350163_16	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-1350163_17	UniRef90	UniRef90_E5Y128	30S ribosomal protein S3	NA
UHGV-1350163_17	eggNOG-mapper	1435051.BMOU_0254	NA	NA
UHGV-1350163_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1350163_18	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1350163_18	UniRef90	UniRef90_E5Y129	ParB-like partition protein	NA
UHGV-1350163_18	eggNOG-mapper	158787.BSCA_1895	ParB-like nuclease domain	NA
UHGV-1350163_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1350163_18	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1350163_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1350163_18	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1350163_19	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1350163_20	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1350163_20	UniRef90	UniRef90_E5Y131	Leucyl-tRNA synthetase	NA
UHGV-1350163_20	eggNOG-mapper	158787.BSCA_1022	HNH endonuclease	NA
UHGV-1350163_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1350163_21	PHROG	phrog_27484	NA	unknown function
UHGV-1350163_22	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-1350163_22	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1350163_22	UniRef90	UniRef90_A0A0M4M1U2	Oligoribonuclease	NA
UHGV-1350163_22	eggNOG-mapper	1437609.BCAL_0154	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-1350163_22	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-1350163_22	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-1350163_23	PHROG	phrog_23583	NA	unknown function
UHGV-1350163_24	PHROG	phrog_25775	NA	unknown function
UHGV-1350163_25	PHROG	phrog_25156	NA	unknown function
UHGV-1350163_28	PHROG	phrog_8013	NA	unknown function
UHGV-1350163_28	eggNOG-mapper	158787.BSCA_0747	tRNA 5'-leader removal	NA
UHGV-1350163_28	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-1350163_28	Structural annotation	COG0789	NA	NA
UHGV-1350163_29	eggNOG-mapper	1380370.JIBA01000018_gene467	NA	NA
UHGV-1350163_29	Structural annotation	PF20505, MF_00194, NF001462	NA	NA
UHGV-1350163_32	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1350163_32	UniRef90	UniRef90_A0A087DGP3	Gp60	NA
UHGV-1350163_32	eggNOG-mapper	158787.BSCA_0745	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-1350163_32	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1350163_33	PHROG	phrog_1496	terminase small subunit	head and packaging
UHGV-1350163_33	UniRef90	UniRef90_A0A087DGP2	Gp25	NA
UHGV-1350163_33	eggNOG-mapper	158787.BSCA_0744	NA	NA
UHGV-1350163_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1350163_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1350163_34	UniRef90	UniRef90_A0A087DGP1	Phage terminase protein large subunit TerL	NA
UHGV-1350163_34	eggNOG-mapper	158787.BSCA_0743	Terminase	NA
UHGV-1350163_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1350163_34	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1350163_35	PHROG	phrog_104	portal protein	head and packaging
UHGV-1350163_35	UniRef90	UniRef90_A0A1L5KQC8	Phage portal protein, SPP1 Gp6-like protein (Fragment)	NA
UHGV-1350163_35	eggNOG-mapper	158787.BSCA_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1350163_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1350163_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1350163_36	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1350163_36	UniRef90	UniRef90_UPI001BDC5C65	toxin glutamine deamidase domain-containing protein	NA
UHGV-1350163_36	eggNOG-mapper	158787.BSCA_0741	NA	NA
UHGV-1350163_36	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1350163_36	Structural annotation	PF18451	NA	NA
UHGV-1350163_37	PHROG	phrog_15003	head scaffolding protein	head and packaging
UHGV-1350163_37	eggNOG-mapper	702459.BBPR_0913	NA	NA
UHGV-1350163_37	Structural annotation	PF14265	NA	NA
UHGV-1350163_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-1350163_38	UniRef90	UniRef90_UPI00080B1550	phage major capsid protein	NA
UHGV-1350163_38	eggNOG-mapper	158787.BSCA_0738	Phage capsid family	NA
UHGV-1350163_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1350163_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1350163_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1350163_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1350163_39	PHROG	phrog_4366	head fiber protein	head and packaging
UHGV-1350163_39	UniRef90	UniRef90_UPI001C385440	head fiber protein	NA
UHGV-1350163_39	eggNOG-mapper	398513.BBNG_00850	NA	NA
UHGV-1350163_40	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1350163_40	UniRef90	UniRef90_UPI001BDC2B90	phage head-tail connector protein	NA
UHGV-1350163_40	eggNOG-mapper	158787.BSCA_0736	NA	NA
UHGV-1350163_41	PHROG	phrog_13779	NA	unknown function
UHGV-1350163_41	UniRef90	UniRef90_UPI000CA38CA7	NA	NA
UHGV-1350163_41	eggNOG-mapper	398513.BBNG_00852	NA	NA
UHGV-1350163_41	Pfam	PF19586	NA	DUF6093
UHGV-1350163_41	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1350163_42	PHROG	phrog_19109	NA	unknown function
UHGV-1350163_42	eggNOG-mapper	398513.BBNG_00853	NA	NA
UHGV-1350163_42	Structural annotation	TIGR01725	NA	NA
UHGV-1350163_43	UniRef90	UniRef90_A0A0M0VIY2	Transcriptional regulator	NA
UHGV-1350163_43	eggNOG-mapper	398513.BBNG_00854	NA	NA
UHGV-1350163_43	Structural annotation	PF06141	NA	NA
UHGV-1350163_44	PHROG	phrog_2491	major tail protein	tail
UHGV-1350163_44	UniRef90	UniRef90_A0A0M3T8I6	Gp28	NA
UHGV-1350163_44	eggNOG-mapper	702459.BBPR_0920	NA	NA
UHGV-1350163_44	Structural annotation	PF16463, TIGR01611, COG5437	NA	NA
UHGV-1350163_45	UniRef90	UniRef90_A0A1S2VW25	DNA primase	NA
UHGV-1350163_45	eggNOG-mapper	702459.BBPR_0921	NA	NA
UHGV-1350163_45	Structural annotation	PF08890	NA	NA
UHGV-1350163_46	UniRef90	UniRef90_A0A0A6VLW6	Terminase	NA
UHGV-1350163_46	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-1350163_47	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1350163_47	UniRef90	UniRef90_UPI0006A44FE2	phage tail tape measure protein	NA
UHGV-1350163_47	eggNOG-mapper	702459.BBPR_0923	Phage-related minor tail protein	NA
UHGV-1350163_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1350163_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1350163_47	COG	COG5283	Phage-related tail protein	NA
UHGV-1350163_47	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1350163_48	PHROG	phrog_5577	minor tail protein	tail
UHGV-1350163_48	UniRef90	UniRef90_A0A2K9BD10	NA	NA
UHGV-1350163_48	eggNOG-mapper	1394176.AWUO01000014_gene652	NA	NA
UHGV-1350163_48	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1350163_49	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-1350163_49	UniRef90	UniRef90_A0A087B698	Putative phage protein gp45	NA
UHGV-1350163_49	eggNOG-mapper	1692.BMAGN_1457	NA	NA
UHGV-1350163_49	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-1350163_50	PHROG	phrog_1885	minor tail protein	tail
UHGV-1350163_50	eggNOG-mapper	1435051.BMOU_0765	NA	NA
UHGV-1350163_50	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1350163_51	PHROG	phrog_21973	tail protein	tail
UHGV-1350163_51	eggNOG-mapper	1391188.A0A068EMP3_9CAUD	NA	NA
UHGV-1350163_52	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-1350163_54	PHROG	phrog_263	holin	lysis
UHGV-1350163_54	UniRef90	UniRef90_A0A0M3T8I8	Phage lysis protein	NA
UHGV-1350163_54	eggNOG-mapper	702459.BBPR_0930	SPP1 phage holin	NA
UHGV-1350163_54	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1350163_55	PHROG	phrog_297	holin	lysis
UHGV-1350163_55	UniRef90	UniRef90_A0A0M5L5E6	CHAP domain protein	NA
UHGV-1350163_55	eggNOG-mapper	1341695.BBOMB_1025	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1350163_55	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1350163_55	Structural annotation	PF08460, NF033202, COG3942	NA	NA
UHGV-1350163_56	KOfam	K07403	nfeD; membrane-bound serine protease (ClpP class)	NA
UHGV-1350163_56	PHROG	phrog_11747	NA	unknown function
UHGV-1350163_56	UniRef90	UniRef90_A0A0M4MM37	ClpP class periplasmic serine protease	NA
UHGV-1350163_56	eggNOG-mapper	404380.Gbem_3471	Serine dehydrogenase proteinase	NA
UHGV-1350163_56	Pfam	PF01972	Serine dehydrogenase proteinase	SDH_sah
UHGV-1350163_56	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1350163_56	Structural annotation	PF01972, MF_00444, TIGR00706, COG0740	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1350163	Yes	41,483 bps	60.64%	100.00%	0.9738
UHGV-0096717	No	45,580 bps	60.33%	99.90%	0.9653
UHGV-0385575	No	39,767 bps	61.08%	95.86%	0.9747
UHGV-1456500	No	34,475 bps	60.75%	83.11%	0.9763
UHGV-2001597	No	32,524 bps	60.51%	78.40%	0.9736
UHGV-1986148	No	31,177 bps	61.35%	75.16%	0.9694
UHGV-1404812	No	28,674 bps	60.77%	69.12%	0.9775
UHGV-0190087	No	28,012 bps	60.68%	67.53%	0.9704
UHGV-1988921	No	26,729 bps	60.14%	64.43%	0.9717
UHGV-1484244	No	26,451 bps	60.20%	63.76%	0.9733
UHGV-0187397	No	26,349 bps	60.18%	63.52%	0.9692
UHGV-1427587	No	21,578 bps	60.97%	52.02%	0.9740
UHGV-2025456	No	18,962 bps	60.88%	45.71%	0.9794
UHGV-1988926	No	15,098 bps	61.47%	36.40%	0.9584
UHGV-2018452	No	14,603 bps	61.85%	35.20%	0.9698
UHGV-1986960	No	13,828 bps	59.96%	33.33%	0.9774