vOTU-054593

Overview

No. of genomes 33

Genome length 41,683 bps

Completeness 100.00% (complete)

Host Collinsella

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-054593
Number of genomes	33
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-07332 › vGENUS-20161 › vSUBGEN-39518 › vOTU-054593
Host taxonomy	Bacteria › Actinobacteriota › Coriobacteriia › Coriobacteriales › Coriobacteriaceae › Collinsella
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1355618
BioSample	SAMEA3664968
Genome length	41,683 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	61
CDS density	89.43%
tRNA count	10
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1355618_1	KOfam	K18189	TACO1; translational activator of cytochrome c oxidase 1	NA
UHGV-1355618_1	PHROG	phrog_34724	NA	unknown function
UHGV-1355618_1	UniRef90	UniRef90_A0A3M2E345	YebC/PmpR family DNA-binding transcriptional regulator (Fragment)	NA
UHGV-1355618_1	eggNOG-mapper	742722.HMPREF9463_01026	transcriptional regulatory protein	NA
UHGV-1355618_1	Pfam	PF20772	TACO1/YebC protein N-terminal domain	TACO1_YebC_N
UHGV-1355618_1	COG	COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	NA
UHGV-1355618_2	Structural annotation	PF20037	NA	NA
UHGV-1355618_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1355618_3	PHROG	phrog_14048	endolysin	lysis
UHGV-1355618_3	UniRef90	UniRef90_UPI00189738D0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1355618_3	eggNOG-mapper	158787.BSCA_1068	Ami_2	NA
UHGV-1355618_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1355618_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1355618_3	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1355618_4	PHROG	phrog_199	holin	lysis
UHGV-1355618_4	UniRef90	UniRef90_UPI0011067090	phage holin family protein	NA
UHGV-1355618_4	eggNOG-mapper	1111121.HMPREF1247_0782	Bacteriophage holin family	NA
UHGV-1355618_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1355618_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1355618_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1355618_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1355618_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1355618_7	UniRef90	UniRef90_UPI000DF7A728	RNA-directed DNA polymerase	NA
UHGV-1355618_7	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1355618_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1355618_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1355618_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1355618_7	Structural annotation	PF00078, MF_04073, TIGR04416, COG3344	NA	NA
UHGV-1355618_8	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-1355618_8	eggNOG-mapper	1226322.HMPREF1545_04032	NA	NA
UHGV-1355618_8	Structural annotation	PF05635, NF008911	NA	NA
UHGV-1355618_9	PHROG	phrog_19280	NA	unknown function
UHGV-1355618_9	UniRef90	UniRef90_A0A143WWR7	NA	NA
UHGV-1355618_9	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-1355618_9	Pfam	PF19789	NA	DUF6273
UHGV-1355618_9	Structural annotation	PF19789	NA	NA
UHGV-1355618_10	eggNOG-mapper	742722.HMPREF9463_00258	NA	NA
UHGV-1355618_11	Structural annotation	PF16450, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-1355618_12	PHROG	phrog_1887	tail protein	tail
UHGV-1355618_12	eggNOG-mapper	1437610.BREU_1373	NA	NA
UHGV-1355618_12	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1355618_13	UniRef90	UniRef90_C4F8I2	Fibronectin type III domain protein	NA
UHGV-1355618_13	eggNOG-mapper	521003.COLINT_02353	Fibronectin type 3 domain	NA
UHGV-1355618_13	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1355618_13	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-1355618_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1355618_14	UniRef90	UniRef90_UPI000413AFB7	phage tail tape measure protein	NA
UHGV-1355618_14	eggNOG-mapper	1111121.HMPREF1247_0013	Phage tail tape measure protein, TP901 family	NA
UHGV-1355618_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1355618_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1355618_14	COG	COG1340	NA	NA
UHGV-1355618_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1355618_17	PHROG	phrog_88	major tail protein	tail
UHGV-1355618_17	UniRef90	UniRef90_A0A559U356	Phi13 family phage major tail protein	NA
UHGV-1355618_17	eggNOG-mapper	365048.Q0H233_9CAUD	NA	NA
UHGV-1355618_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1355618_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1355618_19	UniRef90	UniRef90_UPI00047AA654	HK97 gp10 family phage protein	NA
UHGV-1355618_19	eggNOG-mapper	658655.HMPREF0988_00539	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1355618_19	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-1355618_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1355618_20	eggNOG-mapper	365048.Q0H236_9CAUD	NA	NA
UHGV-1355618_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1355618_21	PHROG	phrog_5223	neck protein	connector
UHGV-1355618_21	UniRef90	UniRef90_UPI00157A3953	head-tail connector protein	NA
UHGV-1355618_21	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-1355618_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1355618_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1355618_22	UniRef90	UniRef90_A0A1Y4GX93	Phage major capsid protein	NA
UHGV-1355618_22	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-1355618_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1355618_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1355618_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1355618_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1355618_23	KOfam	K06904	NA	NA
UHGV-1355618_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1355618_23	UniRef90	UniRef90_UPI0003AE6F4D	HK97 family phage prohead protease	NA
UHGV-1355618_23	eggNOG-mapper	1111121.HMPREF1247_0023	Caudovirus prohead serine protease	NA
UHGV-1355618_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1355618_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1355618_23	COG	COG3740	Phage head maturation protease	NA
UHGV-1355618_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1355618_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-1355618_24	UniRef90	UniRef90_UPI000424C3F7	phage portal protein	NA
UHGV-1355618_24	eggNOG-mapper	1111121.HMPREF1247_0024	Phage portal protein	NA
UHGV-1355618_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1355618_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1355618_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1355618_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1355618_25	UniRef90	UniRef90_UPI0004294E15	terminase large subunit	NA
UHGV-1355618_25	eggNOG-mapper	1111121.HMPREF1247_0025	Phage Terminase	NA
UHGV-1355618_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1355618_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1355618_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1355618_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1355618_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1355618_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1355618_27	UniRef90	UniRef90_UPI001D0B09C7	HNH endonuclease	NA
UHGV-1355618_27	eggNOG-mapper	927704.SELR_11230	HNH endonuclease	NA
UHGV-1355618_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1355618_30	UniRef90	UniRef90_UPI0018998A26	helix-turn-helix transcriptional regulator	NA
UHGV-1355618_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1355618_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1355618_31	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1355618_31	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1355618_31	UniRef90	UniRef90_UPI00110588D4	ATP-binding protein	NA
UHGV-1355618_31	eggNOG-mapper	903814.ELI_1585	NA	NA
UHGV-1355618_31	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1355618_31	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1355618_31	Structural annotation	PF01695, PF06827, MF_00377, NF005992, COG1484	NA	NA
UHGV-1355618_32	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1355618_32	UniRef90	UniRef90_UPI001105FF6B	replisome organizer	NA
UHGV-1355618_32	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-1355618_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1355618_32	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1355618_35	UniRef90	UniRef90_UPI001105C552	helix-turn-helix domain-containing protein	NA
UHGV-1355618_35	eggNOG-mapper	1284775.HMPREF1640_13095	sequence-specific DNA binding	NA
UHGV-1355618_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1355618_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1355618_38	PHROG	phrog_17662	NA	unknown function
UHGV-1355618_38	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-1355618_38	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-1355618_38	Structural annotation	PF04055, MF_03129, TIGR04317, COG0320	NA	NA
UHGV-1355618_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1355618_48	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1355618_48	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1355618_48	UniRef90	UniRef90_UPI001E3E2DB2	dUTP diphosphatase	NA
UHGV-1355618_48	eggNOG-mapper	1504822.CCNO01000015_gene601	dUTP diphosphatase activity	NA
UHGV-1355618_48	Pfam	PF00692	dUTPase	dUTPase
UHGV-1355618_48	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1355618_48	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1355618_48	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1355618_49	Structural annotation	PF04545, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-1355618_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1355618_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1355618_52	UniRef90	UniRef90_A0A415BES7	Single-stranded DNA-binding protein	NA
UHGV-1355618_52	eggNOG-mapper	742722.HMPREF9463_00041	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1355618_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1355618_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1355618_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1355618_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1355618_52	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-1355618_53	UniRef90	UniRef90_A0A6N3DMH1	30S ribosomal protein S13	NA
UHGV-1355618_53	eggNOG-mapper	1504822.CCNO01000015_gene823	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	NA
UHGV-1355618_53	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-1355618_53	COG	COG0099	Ribosomal protein S13	NA
UHGV-1355618_53	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-1355618_54	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1355618_54	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1355618_54	UniRef90	UniRef90_UPI0014858083	recombinase RecT	NA
UHGV-1355618_54	eggNOG-mapper	1504822.CCNO01000015_gene598	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-1355618_54	Pfam	PF03837	RecT family	RecT
UHGV-1355618_54	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1355618_54	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1355618_54	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1355618_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1355618_55	UniRef90	UniRef90_UPI00110603B3	YqaJ viral recombinase family protein	NA
UHGV-1355618_55	eggNOG-mapper	1504822.CCNO01000015_gene597	YqaJ viral recombinase family	NA
UHGV-1355618_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1355618_55	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1355618_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1355618_55	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1355618_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1355618_57	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1355618_57	UniRef90	UniRef90_A0A7X7SYA0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1355618_57	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1355618_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1355618_58	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1355618_60	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-1355618_60	PHROG	phrog_200	lipoprotein	other
UHGV-1355618_60	UniRef90	UniRef90_A0A173XJF0	Putative virion core protein (Lumpy skin disease virus)	NA
UHGV-1355618_60	eggNOG-mapper	76636.JOEC01000002_gene2577	prohibitin homologues	NA
UHGV-1355618_60	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1355618_60	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1355618_61	UniRef90	UniRef90_A0A517DX24	HTH-type transcriptional regulator ImmR	NA
UHGV-1355618_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1355618	Yes	41,683 bps	62.28%	100.00%	0.9747
UHGV-0338323	No	46,468 bps	61.87%	90.72%	0.9667
UHGV-0100171	No	45,430 bps	61.86%	88.79%	0.9748
UHGV-1445094	No	44,911 bps	61.82%	87.76%	0.9687
UHGV-1526682	No	43,023 bps	61.87%	83.96%	0.9761
UHGV-0202627	No	42,420 bps	62.13%	82.78%	0.9717
UHGV-1532499	No	41,339 bps	62.30%	80.94%	0.9738
UHGV-0164710	No	41,443 bps	62.00%	80.78%	0.9739
UHGV-0084791	No	41,202 bps	62.09%	80.32%	0.9746
UHGV-1525981	No	41,083 bps	62.16%	80.17%	0.9729
UHGV-0156328	No	40,396 bps	62.21%	78.86%	0.9753
UHGV-1529365	No	38,747 bps	62.29%	75.60%	0.9589
UHGV-1972063	No	32,507 bps	62.28%	63.39%	0.9758
UHGV-1434133	No	30,976 bps	62.71%	60.49%	0.9756
UHGV-1468206	No	25,605 bps	61.29%	56.14%	0.9613
UHGV-1522199	No	28,608 bps	61.40%	55.15%	0.9743
UHGV-1613376	No	25,896 bps	62.97%	50.53%	0.9746
UHGV-0334528	No	23,860 bps	63.04%	47.04%	0.9789
UHGV-1571368	No	23,527 bps	63.23%	45.88%	0.9731
UHGV-1573172	No	22,226 bps	63.02%	43.58%	0.9722
UHGV-1658410	No	21,782 bps	63.04%	42.71%	0.9737
UHGV-0145992	No	21,602 bps	60.78%	41.99%	0.9708
UHGV-1727726	No	17,545 bps	60.36%	35.59%	0.9681
UHGV-1823351	No	15,881 bps	62.68%	31.70%	0.9805
UHGV-1759678	No	15,513 bps	60.26%	31.47%	0.9579
UHGV-1811266	No	15,943 bps	60.95%	31.11%	0.9713
UHGV-1772482	No	15,636 bps	62.65%	30.90%	0.9772
UHGV-1555280	No	11,396 bps	63.23%	24.76%	0.9605
UHGV-1560665	No	11,240 bps	63.36%	24.69%	0.9674
UHGV-1986198	No	11,114 bps	61.60%	23.94%	0.9708
UHGV-0242157	No	10,293 bps	60.35%	22.24%	0.9543
UHGV-1686386	No	10,826 bps	63.72%	20.77%	0.9813
UHGV-1713100	No	13,067 bps	63.89%	15.61%	0.9693