vOTU-056479

Overview

No. of genomes 19

Genome length 40,907 bps

Completeness 100.00% (complete)

Host Flavonifractor plautii

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-056479
Number of genomes	19
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00367 › vGENUS-00574 › vSUBGEN-36501 › vOTU-056479
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Flavonifractor › Flavonifractor plautii
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1370000
BioSample	SAMEA2580022
Genome length	40,907 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	72
CDS density	90.58%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1370000_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1370000_2	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1370000_3	PHROG	phrog_20016	NA	unknown function
UHGV-1370000_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1370000_3	eggNOG-mapper	1485543.JMME01000025_gene2458	NA	NA
UHGV-1370000_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1370000_4	PHROG	phrog_16490	NA	unknown function
UHGV-1370000_4	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-1370000_5	PHROG	phrog_22984	NA	unknown function
UHGV-1370000_6	PHROG	phrog_21718	NA	unknown function
UHGV-1370000_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1370000_7	PHROG	phrog_3754	NA	unknown function
UHGV-1370000_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1370000_10	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1370000_10	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1370000_11	PHROG	phrog_4105	NA	unknown function
UHGV-1370000_11	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-1370000_12	PHROG	phrog_1129	holin	lysis
UHGV-1370000_12	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1370000_12	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1370000_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1370000_12	Structural annotation	PF06946	NA	NA
UHGV-1370000_13	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1370000_13	PHROG	phrog_18955	NA	unknown function
UHGV-1370000_13	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-1370000_13	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-1370000_13	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1370000_13	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1370000_13	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1370000_13	Structural annotation	PF09992, PF01510, PF18342, NF008758, NF040678, COG5632, COG4632, COG4991	NA	NA
UHGV-1370000_14	PHROG	phrog_2310	NA	unknown function
UHGV-1370000_15	PHROG	phrog_24451	NA	unknown function
UHGV-1370000_15	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-1370000_16	Structural annotation	PF03426, NF033675	NA	NA
UHGV-1370000_17	PHROG	phrog_27545	NA	unknown function
UHGV-1370000_17	eggNOG-mapper	742738.HMPREF9460_00363	NA	NA
UHGV-1370000_18	PHROG	phrog_863	tail fiber assembly	tail
UHGV-1370000_18	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1370000_18	Structural annotation	PF21722	NA	NA
UHGV-1370000_19	PHROG	phrog_11157	NA	unknown function
UHGV-1370000_19	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-1370000_19	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-1370000_19	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-1370000_19	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1370000_19	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1370000_19	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA
UHGV-1370000_21	PHROG	phrog_13879	NA	unknown function
UHGV-1370000_21	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1370000_21	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1370000_22	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-1370000_22	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1370000_23	PHROG	phrog_23464	NA	unknown function
UHGV-1370000_23	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1370000_23	COG	COG5283	Phage-related tail protein	NA
UHGV-1370000_23	Structural annotation	PF20155	NA	NA
UHGV-1370000_25	PHROG	phrog_18646	NA	unknown function
UHGV-1370000_26	PHROG	phrog_885	major tail protein	tail
UHGV-1370000_26	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1370000_26	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1370000_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1370000_27	PHROG	phrog_17405	head protein	head and packaging
UHGV-1370000_27	Structural annotation	PF11367	NA	NA
UHGV-1370000_28	PHROG	phrog_1233	NA	unknown function
UHGV-1370000_28	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1370000_28	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-1370000_29	PHROG	phrog_17977	NA	unknown function
UHGV-1370000_29	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1370000_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1370000_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-1370000_31	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1370000_31	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-1370000_31	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1370000_31	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1370000_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1370000_32	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1370000_32	Structural annotation	PF06810	NA	NA
UHGV-1370000_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1370000_34	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-1370000_34	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1370000_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1370000_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1370000_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1370000_35	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1370000_35	UniRef90	UniRef90_A0A1C7FSE6	Phage_Mu_F domain-containing protein	NA
UHGV-1370000_35	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1370000_35	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1370000_35	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1370000_35	COG	COG2369	NA	NA
UHGV-1370000_35	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1370000_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-1370000_36	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1370000_36	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1370000_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1370000_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1370000_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1370000_37	PHROG	phrog_10250	NA	unknown function
UHGV-1370000_37	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-1370000_37	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-1370000_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1370000_37	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1370000_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1370000_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-1370000_37	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1370000_38	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-1370000_38	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1370000_38	Structural annotation	PF13542	NA	NA
UHGV-1370000_39	UniRef90	UniRef90_A0A174E601	Helix-turn-helix	NA
UHGV-1370000_39	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1370000_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1370000_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1370000_40	PHROG	phrog_924	NA	unknown function
UHGV-1370000_40	UniRef90	UniRef90_U2BA60	NA	NA
UHGV-1370000_40	Pfam	PF04448	NA	DUF551
UHGV-1370000_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1370000_40	Structural annotation	NF041588	NA	NA
UHGV-1370000_43	PHROG	phrog_22543	NA	unknown function
UHGV-1370000_45	PHROG	phrog_38832	NA	unknown function
UHGV-1370000_45	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1370000_47	Structural annotation	NF000937	NA	NA
UHGV-1370000_48	PHROG	phrog_10714	NA	unknown function
UHGV-1370000_48	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-1370000_49	PHROG	phrog_24658	NA	unknown function
UHGV-1370000_49	UniRef90	UniRef90_R6HTM1	Gp50	NA
UHGV-1370000_50	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1370000_51	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-1370000_51	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1370000_51	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1370000_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1370000_52	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1370000_52	UniRef90	UniRef90_A0A6I2QZV1	Cytosine-specific methyltransferase	NA
UHGV-1370000_52	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-1370000_52	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1370000_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1370000_52	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1370000_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1370000_52	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1370000_54	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1370000_54	UniRef90	UniRef90_A0A7V8QTJ7	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-1370000_54	eggNOG-mapper	994601.G9BW80_9CAUD	nucleic acid binding	NA
UHGV-1370000_54	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-1370000_55	PHROG	phrog_9804	NA	unknown function
UHGV-1370000_55	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-1370000_55	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-1370000_55	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1370000_55	Structural annotation	PF11417	NA	NA
UHGV-1370000_56	PHROG	phrog_16304	NA	unknown function
UHGV-1370000_56	UniRef90	UniRef90_A0A810QMI2	NA	NA
UHGV-1370000_56	Pfam	PF19808	NA	DUF6291
UHGV-1370000_56	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1370000_56	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1370000_57	PHROG	phrog_18107	NA	unknown function
UHGV-1370000_57	UniRef90	UniRef90_R6I207	PF05037 family protein	NA
UHGV-1370000_57	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-1370000_57	Structural annotation	PF05037	NA	NA
UHGV-1370000_58	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1370000_58	UniRef90	UniRef90_UPI0013D1CBB8	AAA family ATPase	NA
UHGV-1370000_58	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-1370000_58	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1370000_60	Structural annotation	PF09943	NA	NA
UHGV-1370000_61	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1370000_61	PHROG	phrog_9562	NA	unknown function
UHGV-1370000_61	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-1370000_61	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-1370000_61	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1370000_61	Pfam	PF19062	NA	DUF5758
UHGV-1370000_61	COG	COG1357	NA	NA
UHGV-1370000_61	Structural annotation	PF19062, PF13599, NF033086, COG1357	NA	NA
UHGV-1370000_64	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-1370000_67	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1370000_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1370000_67	UniRef90	UniRef90_UPI0009FAA490	helix-turn-helix domain-containing protein	NA
UHGV-1370000_67	eggNOG-mapper	1519439.JPJG01000066_gene2398	Helix-turn-helix XRE-family like proteins	NA
UHGV-1370000_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1370000_67	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1370000_68	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1370000_68	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1370000_68	UniRef90	UniRef90_UPI0009522291	helix-turn-helix domain-containing protein	NA
UHGV-1370000_68	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-1370000_68	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1370000_68	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1370000_68	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-1370000_69	PHROG	phrog_87	metallo-protease	other
UHGV-1370000_69	UniRef90	UniRef90_G9YWB6	Peptidase_M78 domain-containing protein	NA
UHGV-1370000_69	eggNOG-mapper	445972.ANACOL_01758	NA	NA
UHGV-1370000_69	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1370000_69	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1370000_70	UniRef90	UniRef90_UPI001956EF77	stalk domain-containing protein	NA
UHGV-1370000_70	eggNOG-mapper	693746.OBV_27580	Copper amine oxidase N-terminal domain	NA
UHGV-1370000_70	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-1370000_71	PHROG	phrog_33872	NA	unknown function
UHGV-1370000_72	KOfam	K14059	int; integrase	NA
UHGV-1370000_72	PHROG	phrog_1	integrase	integration and excision
UHGV-1370000_72	UniRef90	UniRef90_UPI0018A8CCD8	site-specific integrase	NA
UHGV-1370000_72	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1370000_72	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1370000_72	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1370000_72	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1370000_72	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1370000	Yes	40,907 bps	54.03%	100.00%	0.9790
UHGV-2204837	No	35,155 bps	53.53%	85.95%	0.9785
UHGV-0071653	No	34,492 bps	53.61%	84.33%	0.9811
UHGV-1536941	No	32,114 bps	53.90%	78.31%	0.9804
UHGV-0191624	No	30,269 bps	54.51%	74.00%	0.9741
UHGV-0142985	No	24,226 bps	53.93%	59.23%	0.9756
UHGV-1424601	No	24,226 bps	53.93%	59.23%	0.9756
UHGV-1573777	No	19,666 bps	54.38%	48.14%	0.9824
UHGV-1736772	No	17,746 bps	53.78%	43.44%	0.9820
UHGV-1735801	No	17,736 bps	53.95%	43.23%	0.9822
UHGV-2044572	No	16,324 bps	54.50%	39.96%	0.9815
UHGV-1565776	No	16,172 bps	53.05%	39.41%	0.9809
UHGV-0934677	No	15,563 bps	54.37%	37.94%	0.9818
UHGV-1766811	No	13,882 bps	54.05%	33.84%	0.9828
UHGV-0864818	No	13,116 bps	52.88%	32.00%	0.9829
UHGV-1838347	No	12,665 bps	54.15%	30.86%	0.9829
UHGV-1561207	No	11,857 bps	54.05%	28.89%	0.9825
UHGV-1742917	No	10,797 bps	52.43%	26.32%	0.9812
UHGV-1791138	No	11,040 bps	52.59%	25.87%	0.9638