vOTU-056884

Overview

vOTU representative UHGV-1372005

No. of genomes 4

Genome length 37,332 bps

Completeness 100.00% (complete)

Host ER4 sp000765235

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-056884
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00077 › vGENUS-00413 › vSUBGEN-02297 › vOTU-056884
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › ER4 › ER4 sp000765235
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1372005
BioSample	SAMEA2338657
Genome length	37,332 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	57
CDS density	91.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1372005_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1372005_2	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-1372005_2	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-1372005_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1372005_2	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1372005_2	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1372005_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1372005_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1372005_3	UniRef90	UniRef90_UPI0019583763	terminase large subunit	NA
UHGV-1372005_3	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-1372005_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1372005_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1372005_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1372005_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1372005_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-1372005_5	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-1372005_5	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-1372005_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1372005_5	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1372005_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1372005_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1372005_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1372005_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1372005_6	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-1372005_6	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-1372005_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1372005_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1372005_6	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1372005_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-1372005_7	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-1372005_7	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1372005_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1372005_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1372005_7	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1372005_8	UniRef90	UniRef90_UPI0002DDE99A	head-tail connector protein	NA
UHGV-1372005_8	eggNOG-mapper	1007096.BAGW01000033_gene1600	NA	NA
UHGV-1372005_8	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1372005_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1372005_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-1372005_9	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-1372005_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1372005_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1372005_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1372005_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1372005_10	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-1372005_10	Structural annotation	PF05657	NA	NA
UHGV-1372005_11	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-1372005_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1372005_11	Structural annotation	TIGR01725	NA	NA
UHGV-1372005_12	PHROG	phrog_88	major tail protein	tail
UHGV-1372005_12	COG	COG5492	NA	NA
UHGV-1372005_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1372005_13	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-1372005_14	PHROG	phrog_23464	NA	unknown function
UHGV-1372005_14	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-1372005_14	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-1372005_14	COG	COG5412	Phage-related protein	NA
UHGV-1372005_14	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1372005_15	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-1372005_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1372005_16	PHROG	phrog_13879	NA	unknown function
UHGV-1372005_16	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1372005_16	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1372005_18	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-1372005_18	PHROG	phrog_11157	NA	unknown function
UHGV-1372005_18	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-1372005_18	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-1372005_18	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-1372005_18	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-1372005_18	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-1372005_19	PHROG	phrog_18725	NA	unknown function
UHGV-1372005_19	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-1372005_19	Structural annotation	PF13754, COG2372	NA	NA
UHGV-1372005_21	eggNOG-mapper	1297617.JPJD01000014_gene875	NA	NA
UHGV-1372005_22	PHROG	phrog_134	NA	unknown function
UHGV-1372005_22	UniRef90	UniRef90_A0A845N2N7	XkdX family protein	NA
UHGV-1372005_22	eggNOG-mapper	1297617.JPJD01000099_gene2170	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1372005_22	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1372005_22	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1372005_24	PHROG	phrog_937	hemolysin	other
UHGV-1372005_24	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1372005_25	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-1372005_25	Structural annotation	PF09992, COG4632	NA	NA
UHGV-1372005_26	PHROG	phrog_13256	NA	unknown function
UHGV-1372005_26	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-1372005_27	PHROG	phrog_21357	endolysin	lysis
UHGV-1372005_27	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-1372005_27	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-1372005_27	Pfam	PF05257	CHAP domain	CHAP
UHGV-1372005_27	COG	COG1388	LysM repeat	NA
UHGV-1372005_27	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-1372005_28	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-1372005_28	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-1372005_30	PHROG	phrog_16490	NA	unknown function
UHGV-1372005_30	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1372005_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1372005_32	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-1372005_32	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1372005_33	KOfam	K14059	int; integrase	NA
UHGV-1372005_33	PHROG	phrog_1	integrase	integration and excision
UHGV-1372005_33	UniRef90	UniRef90_UPI001EDEB0AD	site-specific integrase	NA
UHGV-1372005_33	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-1372005_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1372005_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1372005_33	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1372005_34	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1372005_34	UniRef90	UniRef90_UPI001A99573C	Ltp family lipoprotein	NA
UHGV-1372005_34	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-1372005_34	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-1372005_34	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1372005_34	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1372005_35	UniRef90	UniRef90_A0A7X3ASF1	XRE family transcriptional regulator	NA
UHGV-1372005_35	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1372005_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1372005_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1372005_35	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1372005_36	Structural annotation	PF09628	NA	NA
UHGV-1372005_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1372005_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1372005_38	UniRef90	UniRef90_A0A1Y3SLP5	HTH cro/C1-type domain-containing protein	NA
UHGV-1372005_38	eggNOG-mapper	1410650.JHWL01000004_gene1768	Helix-turn-helix XRE-family like proteins	NA
UHGV-1372005_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1372005_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1372005_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1372005_39	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-1372005_40	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1372005_40	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-1372005_40	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-1372005_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1372005_40	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1372005_40	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-1372005_42	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1372005_42	UniRef90	UniRef90_UPI001EE1549C	helix-turn-helix domain-containing protein	NA
UHGV-1372005_42	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-1372005_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1372005_42	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-1372005_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1372005_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1372005_43	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-1372005_43	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-1372005_43	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1372005_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1372005_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-1372005_43	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-1372005_44	PHROG	phrog_27610	NA	unknown function
UHGV-1372005_45	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1372005_45	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1372005_45	UniRef90	UniRef90_A0A3D2YEJ4	DNA methyltransferase	NA
UHGV-1372005_45	eggNOG-mapper	706437.HMPREF0813_02023	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1372005_45	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-1372005_45	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1372005_45	COG	COG0338	DNA-adenine methylase	NA
UHGV-1372005_45	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-1372005_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1372005_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1372005_46	UniRef90	UniRef90_UPI001C0253FB	ParA family protein	NA
UHGV-1372005_46	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-1372005_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-1372005_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1372005_46	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1372005_47	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1372005_47	PHROG	phrog_27290	NA	unknown function
UHGV-1372005_47	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-1372005_47	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-1372005_47	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1372005_47	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1372005_47	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1372005_50	PHROG	phrog_38832	NA	unknown function
UHGV-1372005_50	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1372005_50	Structural annotation	PF07073	NA	NA
UHGV-1372005_51	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1372005_51	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-1372005_51	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-1372005_51	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-1372005_55	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1372005_55	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-1372005_55	Structural annotation	PF11726	NA	NA
UHGV-1372005_56	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1372005_56	UniRef90	UniRef90_UPI001C022B94	HNH endonuclease	NA
UHGV-1372005_56	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-1372005_56	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1372005_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1372005_56	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1372005_57	PHROG	phrog_21498	NA	unknown function
UHGV-1372005_57	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-1372005_57	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-1372005_57	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1372005_57	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1372005_57	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1372005_57	Structural annotation	PF02195, PF05869, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1372005	Yes	37,332 bps	62.62%	100.00%	0.9787
UHGV-0066113	No	34,060 bps	62.40%	93.24%	0.9803
UHGV-1427084	No	34,060 bps	62.40%	93.24%	0.9803
UHGV-1459968	No	20,617 bps	62.07%	56.17%	0.9764