vOTU-059188

Overview

vOTU representative UHGV-1967866

No. of genomes 4

Genome length 46,900 bps

Completeness 100.00% (complete)

Host Ruminococcus D bicirculans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-059188
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00942 › vGENUS-00845 › vSUBGEN-02347 › vOTU-059188
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus D › Ruminococcus D bicirculans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1967866
BioSample	SAMN03922479
Genome length	46,900 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	66
CDS density	87.63%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1967866_4	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1967866_4	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-1967866_4	eggNOG-mapper	861454.HMPREF9099_00346	NA	NA
UHGV-1967866_4	Pfam	PF03837	RecT family	RecT
UHGV-1967866_4	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-1967866_5	PHROG	phrog_1499	NA	unknown function
UHGV-1967866_5	UniRef90	UniRef90_A0A374HKI1	AAA_23 domain-containing protein	NA
UHGV-1967866_5	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-1967866_5	Pfam	PF13476	AAA domain	AAA_23
UHGV-1967866_5	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1967866_5	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1967866_6	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1967866_6	UniRef90	UniRef90_A0A374HKI3	NA	NA
UHGV-1967866_6	eggNOG-mapper	861454.HMPREF9099_00347	NA	NA
UHGV-1967866_6	Pfam	PF12684	NA	DUF3799
UHGV-1967866_6	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1967866_6	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1967866_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1967866_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1967866_7	UniRef90	UniRef90_A0A374HKI2	Single-stranded DNA-binding protein	NA
UHGV-1967866_7	eggNOG-mapper	1410617.JHXH01000001_gene879	Single-stranded DNA-binding protein	NA
UHGV-1967866_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1967866_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1967866_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1967866_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1967866_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1967866_8	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1967866_8	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1967866_8	UniRef90	UniRef90_A0A374HMN2	ATP-dependent helicase	NA
UHGV-1967866_8	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-1967866_8	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1967866_8	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1967866_8	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1967866_8	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1967866_8	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-1967866_10	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1967866_10	UniRef90	UniRef90_A0A374HKI6	VRR-NUC domain-containing protein	NA
UHGV-1967866_10	eggNOG-mapper	873448.STRPO_0260	VRR-NUC domain	NA
UHGV-1967866_10	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1967866_10	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-1967866_13	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1967866_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1967866_13	UniRef90	UniRef90_A0A374HKH3	DNA methylase N-4	NA
UHGV-1967866_13	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-1967866_13	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1967866_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1967866_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1967866_13	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1967866_15	PHROG	phrog_20526	NA	unknown function
UHGV-1967866_17	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1967866_17	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-1967866_17	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1967866_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1967866_17	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1967866_19	PHROG	phrog_22543	NA	unknown function
UHGV-1967866_20	PHROG	phrog_8684	NA	unknown function
UHGV-1967866_20	UniRef90	UniRef90_A0A374HKH4	YopX domain-containing protein	NA
UHGV-1967866_20	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-1967866_20	Pfam	PF09643	YopX protein	YopX
UHGV-1967866_20	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1967866_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1967866_21	eggNOG-mapper	246199.CUS_5908	NA	NA
UHGV-1967866_21	AcrCatalog	cluster_136737	NA	NA
UHGV-1967866_22	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1967866_22	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1967866_22	UniRef90	UniRef90_A0A374HKH8	Toprim domain-containing protein	NA
UHGV-1967866_22	eggNOG-mapper	2754.EH55_09010	Phage plasmid primase P4 family	NA
UHGV-1967866_22	PADLOC	drt-cluster192	DRT	DRT
UHGV-1967866_22	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1967866_22	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1967866_22	Pfam	PF19263	NA	DUF5906
UHGV-1967866_22	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1967866_22	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1967866_22	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1967866_22	Structural annotation	PF04735, MF_00974, MF_04000, NF005477, COG3378, COG0358	NA	NA
UHGV-1967866_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1967866_23	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-1967866_23	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-1967866_23	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1967866_23	Structural annotation	PF16677	NA	NA
UHGV-1967866_26	UniRef90	UniRef90_A0A374HMV1	HTH cro/C1-type domain-containing protein	NA
UHGV-1967866_26	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-1967866_28	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-1967866_28	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-1967866_28	UniRef90	UniRef90_A0A374HKF2	Recombinase family protein	NA
UHGV-1967866_28	eggNOG-mapper	931276.Cspa_c57140	Resolvase, N terminal domain	NA
UHGV-1967866_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1967866_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1967866_28	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-1967866_29	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1967866_29	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-1967866_29	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1967866_29	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1967866_29	COG	COG5410	NA	NA
UHGV-1967866_29	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1967866_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-1967866_31	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-1967866_31	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1967866_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1967866_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1967866_32	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1967866_32	UniRef90	UniRef90_A0A374HKG4	Phage_Mu_F domain-containing protein	NA
UHGV-1967866_32	eggNOG-mapper	649747.HMPREF0083_01681	phage Mu protein	NA
UHGV-1967866_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1967866_32	COG	COG2369	NA	NA
UHGV-1967866_32	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1967866_33	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-1967866_33	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-1967866_33	Structural annotation	PF14265	NA	NA
UHGV-1967866_34	PHROG	phrog_909	major head protein	head and packaging
UHGV-1967866_34	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-1967866_35	PHROG	phrog_29	major head protein	head and packaging
UHGV-1967866_35	UniRef90	UniRef90_A0A374HKR5	Phage capsid protein	NA
UHGV-1967866_35	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-1967866_35	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1967866_35	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1967866_35	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-1967866_36	UniRef90	UniRef90_A0A374HKI7	DNA-packaging protein	NA
UHGV-1967866_36	eggNOG-mapper	996306.SSUR61_0983	NA	NA
UHGV-1967866_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1967866_36	Structural annotation	TIGR01560	NA	NA
UHGV-1967866_37	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-1967866_38	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-1967866_38	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-1967866_39	PHROG	phrog_78	tail terminator	connector
UHGV-1967866_39	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1967866_40	UniRef90	UniRef90_F4LSE1	Putative Major tail protein	NA
UHGV-1967866_40	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-1967866_40	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1967866_41	UniRef90	UniRef90_A0A374HKD4	NA	NA
UHGV-1967866_41	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1967866_41	Pfam	PF16478	NA	DUF5055
UHGV-1967866_41	Structural annotation	PF16478	NA	NA
UHGV-1967866_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1967866_43	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1967866_43	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1967866_44	PHROG	phrog_1194	NA	unknown function
UHGV-1967866_44	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-1967866_44	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1967866_45	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-1967866_45	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-1967866_45	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1967866_47	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-1967866_47	Structural annotation	PF10651	NA	NA
UHGV-1967866_49	PHROG	phrog_134	NA	unknown function
UHGV-1967866_49	UniRef90	UniRef90_A0A373PY86	XkdX family protein	NA
UHGV-1967866_49	eggNOG-mapper	478749.BRYFOR_07560	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1967866_49	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1967866_49	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1967866_49	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1967866_50	UniRef90	UniRef90_UPI0009FBEB5A	phage holin family protein	NA
UHGV-1967866_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1967866_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1967866_51	PHROG	phrog_8781	endolysin	lysis
UHGV-1967866_51	UniRef90	UniRef90_A0A373PY71	CHAP domain-containing protein	NA
UHGV-1967866_51	eggNOG-mapper	1179226.AJXO01000005_gene1880	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1967866_51	Pfam	PF05257	CHAP domain	CHAP
UHGV-1967866_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1967866_51	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-1967866_52	KOfam	K14059	int; integrase	NA
UHGV-1967866_52	PHROG	phrog_1	integrase	integration and excision
UHGV-1967866_52	UniRef90	UniRef90_A0A374HMM1	Site-specific integrase	NA
UHGV-1967866_52	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-1967866_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1967866_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1967866_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1967866_52	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1967866_53	PHROG	phrog_38135	NA	unknown function
UHGV-1967866_53	UniRef90	UniRef90_R6T7M7	NA	NA
UHGV-1967866_53	eggNOG-mapper	1151292.QEW_0647	NA	NA
UHGV-1967866_53	Pfam	PF14020	NA	DUF4236
UHGV-1967866_53	Structural annotation	PF14020	NA	NA
UHGV-1967866_54	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1967866_54	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1967866_54	UniRef90	UniRef90_A0A374HKV0	XRE family transcriptional regulator	NA
UHGV-1967866_54	eggNOG-mapper	471881.PROPEN_03478	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1967866_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1967866_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1967866_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1967866_57	PHROG	phrog_17658	NA	unknown function
UHGV-1967866_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1967866_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1967866_59	UniRef90	UniRef90_UPI00189F6990	helix-turn-helix domain-containing protein	NA
UHGV-1967866_59	eggNOG-mapper	1235793.C809_02181	TRANSCRIPTIONal	NA
UHGV-1967866_59	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1967866_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1967866_59	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1967866_60	UniRef90	UniRef90_A0A374HMN8	XRE family transcriptional regulator	NA
UHGV-1967866_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1967866_61	UniRef90	UniRef90_A0A374HKH2	XRE family transcriptional regulator	NA
UHGV-1967866_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1967866_61	COG	COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	NA
UHGV-1967866_63	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1967866_63	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1967866_63	UniRef90	UniRef90_R6T0I0	MerR family transcriptional regulator	NA
UHGV-1967866_63	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1967866_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1967866_63	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-1967866_66	eggNOG-mapper	760568.Desku_0919	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1967866	Yes	46,900 bps	43.55%	100.00%	0.9786
UHGV-0134095	No	48,792 bps	43.65%	99.90%	0.9797
UHGV-1491984	No	48,792 bps	43.65%	99.90%	0.9787
UHGV-0353138	No	47,591 bps	43.57%	99.90%	0.9783