vOTU-059278

Overview

vOTU representative UHGV-2031746

No. of genomes 5

Genome length 54,555 bps

Completeness 100.00% (complete)

Host Lachnospira

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-059278
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-00026 › vGENUS-00148 › vSUBGEN-28324 › vOTU-059278
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Lachnospira
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2031746
BioSample	SAMEA2737777
Genome length	54,555 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	94
CDS density	89.40%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2031746_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2031746_1	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-2031746_1	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-2031746_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2031746_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2031746_1	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-2031746_2	PHROG	phrog_25456	NA	unknown function
UHGV-2031746_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2031746_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2031746_3	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-2031746_3	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-2031746_3	Pfam	PF03837	RecT family	RecT
UHGV-2031746_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2031746_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2031746_3	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2031746_5	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2031746_5	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2031746_5	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-2031746_5	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-2031746_5	Pfam	PF13476	AAA domain	AAA_23
UHGV-2031746_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2031746_5	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2031746_7	PHROG	phrog_26861	NA	unknown function
UHGV-2031746_7	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-2031746_7	eggNOG-mapper	1235802.C823_04125	NA	NA
UHGV-2031746_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2031746_7	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-2031746_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2031746_7	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2031746_10	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2031746_10	Structural annotation	PF10552	NA	NA
UHGV-2031746_16	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2031746_16	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-2031746_16	UniRef90	UniRef90_R7BII5	AntA domain-containing protein	NA
UHGV-2031746_16	eggNOG-mapper	397290.C810_01343	AntA/AntB antirepressor	NA
UHGV-2031746_16	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2031746_16	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2031746_16	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-2031746_18	PHROG	phrog_32192	NA	unknown function
UHGV-2031746_18	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-2031746_19	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2031746_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2031746_19	UniRef90	UniRef90_R7BIH5	DNA-binding helix-turn-helix protein	NA
UHGV-2031746_19	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-2031746_19	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2031746_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031746_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2031746_19	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2031746_20	KOfam	K07273	acm; lysozyme	NA
UHGV-2031746_20	PHROG	phrog_6745	endolysin	lysis
UHGV-2031746_20	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-2031746_20	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-2031746_20	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2031746_20	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2031746_20	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-2031746_22	PHROG	phrog_6616	tail protein	tail
UHGV-2031746_22	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-2031746_22	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2031746_22	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2031746_22	COG	COG4926	Phage-related protein	NA
UHGV-2031746_22	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-2031746_23	Structural annotation	PF07761	NA	NA
UHGV-2031746_24	PHROG	phrog_1194	NA	unknown function
UHGV-2031746_24	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-2031746_24	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2031746_25	Structural annotation	PF08931	NA	NA
UHGV-2031746_26	PHROG	phrog_23726	NA	unknown function
UHGV-2031746_26	UniRef90	UniRef90_A0A1M5TXV8	Zinc-ribbon domain-containing protein	NA
UHGV-2031746_26	eggNOG-mapper	1384484.AEQU_1334	cell wall organization	NA
UHGV-2031746_26	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-2031746_27	PHROG	phrog_28918	NA	unknown function
UHGV-2031746_27	UniRef90	UniRef90_A0A1C5WKI4	Phage-related protein	NA
UHGV-2031746_27	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-2031746_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2031746_29	PHROG	phrog_36112	NA	unknown function
UHGV-2031746_29	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-2031746_29	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-2031746_29	Structural annotation	PF16478	NA	NA
UHGV-2031746_31	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-2031746_31	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2031746_32	Structural annotation	PF05657	NA	NA
UHGV-2031746_33	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-2031746_34	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-2031746_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2031746_35	PHROG	phrog_1129	holin	lysis
UHGV-2031746_35	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-2031746_35	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2031746_35	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2031746_35	Structural annotation	PF06946	NA	NA
UHGV-2031746_36	PHROG	phrog_1863	NA	unknown function
UHGV-2031746_36	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-2031746_37	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-2031746_38	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-2031746_38	Structural annotation	PF21169	NA	NA
UHGV-2031746_39	PHROG	phrog_544	major head protein	head and packaging
UHGV-2031746_39	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-2031746_39	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-2031746_39	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2031746_39	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2031746_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-2031746_41	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-2031746_41	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2031746_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2031746_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2031746_42	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-2031746_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2031746_43	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2031746_43	Structural annotation	PF02996	NA	NA
UHGV-2031746_44	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2031746_44	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-2031746_44	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-2031746_44	COG	COG5410	NA	NA
UHGV-2031746_44	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2031746_49	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-2031746_51	Structural annotation	PF04466	NA	NA
UHGV-2031746_53	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-2031746_53	Structural annotation	PF05225, COG2886	NA	NA
UHGV-2031746_54	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2031746_54	UniRef90	UniRef90_A0A843HGH8	Conserved phage C-terminal domain-containing protein	NA
UHGV-2031746_54	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-2031746_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2031746_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2031746_54	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-2031746_56	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-2031746_56	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2031746_56	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2031746_56	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2031746_56	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2031746_56	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-2031746_57	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-2031746_57	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-2031746_60	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2031746_60	UniRef90	UniRef90_A0A3E5AKX4	XRE family transcriptional regulator	NA
UHGV-2031746_60	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2031746_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2031746_60	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2031746_61	PHROG	phrog_6246	NA	unknown function
UHGV-2031746_61	Structural annotation	PF04937, NF041175	NA	NA
UHGV-2031746_62	eggNOG-mapper	592031.GCWU000322_00057	NA	NA
UHGV-2031746_64	PHROG	phrog_1233	NA	unknown function
UHGV-2031746_64	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-2031746_64	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-2031746_64	Structural annotation	PF20352	NA	NA
UHGV-2031746_65	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-2031746_66	PHROG	phrog_20016	NA	unknown function
UHGV-2031746_66	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2031746_66	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2031746_66	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2031746_67	PHROG	phrog_16490	NA	unknown function
UHGV-2031746_67	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2031746_69	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-2031746_69	Structural annotation	NF033819	NA	NA
UHGV-2031746_71	KOfam	K14059	int; integrase	NA
UHGV-2031746_71	PHROG	phrog_1	integrase	integration and excision
UHGV-2031746_71	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-2031746_71	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-2031746_71	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2031746_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2031746_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2031746_71	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2031746_72	PHROG	phrog_16129	excisionase	integration and excision
UHGV-2031746_72	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-2031746_72	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-2031746_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2031746_72	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-2031746_72	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2031746_72	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-2031746_76	PHROG	phrog_9804	NA	unknown function
UHGV-2031746_76	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-2031746_76	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-2031746_76	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2031746_76	Structural annotation	PF11417	NA	NA
UHGV-2031746_77	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2031746_77	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-2031746_77	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-2031746_77	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-2031746_80	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2031746_80	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2031746_80	UniRef90	UniRef90_A0A417JW39	Methyltransferase	NA
UHGV-2031746_80	eggNOG-mapper	1122243.KB903771_gene1539	DNA methylase	NA
UHGV-2031746_80	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2031746_80	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2031746_80	COG	COG0863	DNA modification methylase	NA
UHGV-2031746_80	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2031746_83	PHROG	phrog_19106	NA	unknown function
UHGV-2031746_83	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-2031746_83	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2031746_83	Structural annotation	TIGR01453	NA	NA
UHGV-2031746_85	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-2031746_86	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2031746_86	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2031746_86	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-2031746_86	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-2031746_86	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2031746_86	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2031746_86	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2031746_86	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2031746_86	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2031746_88	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2031746_89	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-2031746_93	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2031746_93	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2031746_93	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-2031746_93	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2031746_93	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2031746_93	dbAPIS	APIS058	NA	NA
UHGV-2031746_93	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2031746_93	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2031746_94	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2031746_94	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-2031746_94	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-2031746_94	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2031746_94	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2031746	Yes	54,555 bps	36.14%	100.00%	0.9794
UHGV-0069792	No	58,268 bps	36.13%	99.90%	0.9762
UHGV-0182696	No	55,225 bps	36.32%	97.12%	0.9726
UHGV-1509884	No	51,102 bps	36.37%	89.87%	0.9794
UHGV-1835068	No	11,678 bps	35.99%	20.64%	0.9778