vOTU-059309

Overview

vOTU representative UHGV-2084181

No. of genomes 9

Genome length 35,647 bps

Completeness 100.00% (complete)

Host Ruminococcus D bicirculans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-059309
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00089 › vGENUS-00394 › vSUBGEN-42042 › vOTU-059309
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus D › Ruminococcus D bicirculans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2084181
BioSample	NA
Genome length	35,647 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	53
CDS density	93.22%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2084181_2	Structural annotation	PF12305	NA	NA
UHGV-2084181_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2084181_3	UniRef90	UniRef90_UPI000A270255	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2084181_3	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-2084181_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2084181_3	COG	COG2369	NA	NA
UHGV-2084181_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-2084181_4	UniRef90	UniRef90_A0A374HLV7	Phage portal protein	NA
UHGV-2084181_4	eggNOG-mapper	717606.PaecuDRAFT_3119	NA	NA
UHGV-2084181_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2084181_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2084181_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2084181_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2084181_5	UniRef90	UniRef90_A0A373XSH6	Terminase	NA
UHGV-2084181_5	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-2084181_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-2084181_5	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2084181_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2084181_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2084181_6	UniRef90	UniRef90_A0A374HNN6	Terminase small subunit	NA
UHGV-2084181_6	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-2084181_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2084181_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2084181_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2084181_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2084181_8	UniRef90	UniRef90_A0A374HLM1	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2084181_8	Structural annotation	PF07374	NA	NA
UHGV-2084181_9	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-2084181_9	UniRef90	UniRef90_A0A373V3T6	NA	NA
UHGV-2084181_9	eggNOG-mapper	2754.EH55_13125	NA	NA
UHGV-2084181_9	Pfam	PF12961	NA	DUF3850
UHGV-2084181_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2084181_10	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2084181_10	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-2084181_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2084181_10	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2084181_13	PHROG	phrog_824	NA	unknown function
UHGV-2084181_13	UniRef90	UniRef90_A0A373V639	VRR-NUC domain-containing protein	NA
UHGV-2084181_13	eggNOG-mapper	641107.CDLVIII_1315	VRR-NUC domain	NA
UHGV-2084181_13	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2084181_13	Structural annotation	PF08774	NA	NA
UHGV-2084181_14	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2084181_14	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2084181_14	UniRef90	UniRef90_A0A373V5W0	ATP-dependent helicase	NA
UHGV-2084181_14	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-2084181_14	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2084181_14	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2084181_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2084181_14	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2084181_14	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-2084181_15	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2084181_15	UniRef90	UniRef90_A0A1C6FHQ3	Superfamily II helicase and inactivated derivatives	NA
UHGV-2084181_15	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-2084181_15	Pfam	PF06048	NA	DUF927
UHGV-2084181_15	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2084181_15	COG	COG5519	NA	NA
UHGV-2084181_15	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-2084181_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2084181_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2084181_16	UniRef90	UniRef90_A0A1C6FIL5	Helix-destabilizing protein	NA
UHGV-2084181_16	eggNOG-mapper	1121370.AQUY01000001_gene1006	Single-strand binding protein family	NA
UHGV-2084181_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2084181_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2084181_16	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-2084181_17	PHROG	phrog_3657	NA	unknown function
UHGV-2084181_17	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-2084181_18	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-2084181_18	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-2084181_18	UniRef90	UniRef90_A0A1C6FHM2	Exodeoxyribonuclease 8	NA
UHGV-2084181_18	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-2084181_18	Pfam	PF12684	NA	DUF3799
UHGV-2084181_18	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2084181_18	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-2084181_22	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2084181_22	UniRef90	UniRef90_A0A374BFJ7	DNA cytosine methyltransferase	NA
UHGV-2084181_22	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2084181_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2084181_22	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-2084181_26	PHROG	phrog_14088	NA	unknown function
UHGV-2084181_26	UniRef90	UniRef90_A0A374HW23	Carboxypeptidase	NA
UHGV-2084181_26	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-2084181_27	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2084181_27	UniRef90	UniRef90_A0A847PN47	Helix-turn-helix transcriptional regulator	NA
UHGV-2084181_27	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-2084181_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2084181_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2084181_28	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2084181_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2084181_28	UniRef90	UniRef90_UPI0019D26C1B	helix-turn-helix domain-containing protein	NA
UHGV-2084181_28	eggNOG-mapper	203119.Cthe_0364	Helix-turn-helix XRE-family like proteins	NA
UHGV-2084181_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2084181_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2084181_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2084181_28	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2084181_29	PHROG	phrog_87	metallo-protease	other
UHGV-2084181_29	UniRef90	UniRef90_A0A374HVM5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2084181_29	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-2084181_29	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2084181_29	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2084181_29	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2084181_30	PHROG	phrog_10292	NA	unknown function
UHGV-2084181_30	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-2084181_30	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-2084181_30	Pfam	PF05154	TM2 domain	TM2
UHGV-2084181_30	COG	COG2314	NA	NA
UHGV-2084181_31	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2084181_31	PHROG	phrog_19856	NA	unknown function
UHGV-2084181_31	UniRef90	UniRef90_A0A373XZW3	Restriction endonuclease	NA
UHGV-2084181_31	eggNOG-mapper	697329.Rumal_1169	Restriction endonuclease	NA
UHGV-2084181_31	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2084181_31	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2084181_31	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2084181_32	KOfam	K14059	int; integrase	NA
UHGV-2084181_32	PHROG	phrog_1	integrase	integration and excision
UHGV-2084181_32	UniRef90	UniRef90_A0A373VP80	Tyr recombinase domain-containing protein	NA
UHGV-2084181_32	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-2084181_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2084181_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2084181_32	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2084181_33	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-2084181_34	UniRef90	UniRef90_A0A8A0RJZ7	HicB-like domain-containing protein	NA
UHGV-2084181_34	eggNOG-mapper	1120973.AQXL01000111_gene959	HicB family	NA
UHGV-2084181_34	Pfam	PF05534	HicB family	HicB
UHGV-2084181_34	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2084181_35	eggNOG-mapper	635013.TherJR_0676	NA	NA
UHGV-2084181_35	Structural annotation	COG1724	NA	NA
UHGV-2084181_36	PHROG	phrog_297	holin	lysis
UHGV-2084181_36	UniRef90	UniRef90_A0A356CY82	Peptidase C51 domain-containing protein	NA
UHGV-2084181_36	eggNOG-mapper	1160721.RBI_II00521	hydrolase, family 25	NA
UHGV-2084181_36	Pfam	PF05257	CHAP domain	CHAP
UHGV-2084181_36	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2084181_36	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-2084181_37	PHROG	phrog_199	holin	lysis
UHGV-2084181_37	UniRef90	UniRef90_A0A373XMP0	Holin	NA
UHGV-2084181_37	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2084181_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2084181_37	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2084181_37	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2084181_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2084181_38	PHROG	phrog_134	NA	unknown function
UHGV-2084181_38	UniRef90	UniRef90_A0A374HLL3	XkdX family protein	NA
UHGV-2084181_38	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2084181_38	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2084181_38	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2084181_40	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-2084181_40	Structural annotation	PF10651	NA	NA
UHGV-2084181_42	PHROG	phrog_9680	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-2084181_42	UniRef90	UniRef90_UPI000B8A255B	polymer-forming cytoskeletal protein	NA
UHGV-2084181_42	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-2084181_42	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2084181_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2084181_44	UniRef90	UniRef90_A0A174Z8D9	Phage-related protein	NA
UHGV-2084181_44	eggNOG-mapper	1122918.KB907248_gene4489	minor tail protein	NA
UHGV-2084181_44	COG	COG1511	NA	NA
UHGV-2084181_45	PHROG	phrog_8355	NA	unknown function
UHGV-2084181_45	UniRef90	UniRef90_A0A1C6EB03	Bacteriophage Gp15 protein	NA
UHGV-2084181_45	eggNOG-mapper	1232449.BAHV02000018_gene1518	Bacteriophage Gp15 protein	NA
UHGV-2084181_46	PHROG	phrog_8300	NA	unknown function
UHGV-2084181_46	eggNOG-mapper	1507.HMPREF0262_00213	NA	NA
UHGV-2084181_47	PHROG	phrog_820	major tail protein	tail
UHGV-2084181_47	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2084181_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2084181_48	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2084181_48	UniRef90	UniRef90_UPI001BEB3BC5	minor capsid protein	NA
UHGV-2084181_48	eggNOG-mapper	717606.PaecuDRAFT_3128	NA	NA
UHGV-2084181_48	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2084181_48	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2084181_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2084181_49	eggNOG-mapper	1507.HMPREF0262_01182	NA	NA
UHGV-2084181_50	PHROG	phrog_8710	NA	unknown function
UHGV-2084181_50	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-2084181_50	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2084181_51	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2084181_51	eggNOG-mapper	1507.HMPREF0262_01180	NA	NA
UHGV-2084181_52	PHROG	phrog_422	major head protein	head and packaging
UHGV-2084181_52	UniRef90	UniRef90_A0A1Y4R5U9	Phage capsid protein	NA
UHGV-2084181_52	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2084181_52	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2084181	Yes	35,647 bps	44.93%	100.00%	0.9802
UHGV-0157954	No	35,647 bps	44.93%	100.00%	0.9806
UHGV-2036725	No	35,354 bps	44.97%	99.90%	0.9805
UHGV-2048777	No	35,354 bps	44.97%	99.90%	0.9805
UHGV-2080812	No	35,354 bps	44.97%	99.90%	0.9805
UHGV-2151930	No	35,354 bps	44.97%	99.90%	0.9802
UHGV-2158635	No	35,354 bps	44.97%	99.90%	0.9805
UHGV-1837828	No	12,455 bps	46.25%	35.20%	0.9827
UHGV-1676582	No	12,647 bps	45.92%	32.70%	0.9820