vOTU-059380

Overview

vOTU representative UHGV-2120452

No. of genomes 3

Genome length 35,753 bps

Completeness 100.00% (complete)

Host CAG-170 sp000432135

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-059380
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00094 › vGENUS-00121 › vSUBGEN-24963 › vOTU-059380
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-170 › CAG-170 sp000432135
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-2120452
BioSample	SAMEA3708897
Genome length	35,753 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	62
CDS density	92.37%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2120452_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2120452_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2120452_1	UniRef90	UniRef90_K1SIM9	Site-specific recombinase (Fragment)	NA
UHGV-2120452_1	eggNOG-mapper	1232449.BAHV02000010_gene2687	Resolvase, N terminal domain	NA
UHGV-2120452_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2120452_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2120452_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2120452_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2120452_2	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-2120452_3	PHROG	phrog_10292	NA	unknown function
UHGV-2120452_3	UniRef90	UniRef90_UPI00101CA94E	TM2 domain-containing protein	NA
UHGV-2120452_3	eggNOG-mapper	1198452.Jab_1c20720	TM2 domain	NA
UHGV-2120452_3	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2120452_3	Pfam	PF05154	TM2 domain	TM2
UHGV-2120452_3	COG	COG2314	NA	NA
UHGV-2120452_4	eggNOG-mapper	552398.HMPREF0866_02158	NOG18738 non supervised orthologous group	NA
UHGV-2120452_4	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-2120452_4	Structural annotation	PF02805	NA	NA
UHGV-2120452_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2120452_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2120452_5	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-2120452_5	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2120452_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2120452_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2120452_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2120452_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2120452_8	eggNOG-mapper	642492.Clole_0961	NA	NA
UHGV-2120452_8	Structural annotation	PF12286	NA	NA
UHGV-2120452_9	Structural annotation	PF10548	NA	NA
UHGV-2120452_11	Structural annotation	NF041247	NA	NA
UHGV-2120452_15	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2120452_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2120452_15	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2120452_15	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2120452_15	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2120452_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2120452_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2120452_15	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2120452_17	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2120452_17	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-2120452_17	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2120452_18	PHROG	phrog_38832	NA	unknown function
UHGV-2120452_18	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-2120452_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2120452_20	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-2120452_20	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-2120452_20	Pfam	PF06356	NA	DUF1064
UHGV-2120452_20	Structural annotation	PF06356	NA	NA
UHGV-2120452_22	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2120452_22	eggNOG-mapper	1423807.BACO01000037_gene1103	NA	NA
UHGV-2120452_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2120452_24	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-2120452_24	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-2120452_24	Structural annotation	PF08271	NA	NA
UHGV-2120452_25	PHROG	phrog_21498	NA	unknown function
UHGV-2120452_25	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-2120452_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2120452_25	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-2120452_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2120452_26	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-2120452_26	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-2120452_27	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-2120452_27	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-2120452_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2120452_28	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-2120452_28	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-2120452_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2120452_29	PHROG	phrog_1066	NA	unknown function
UHGV-2120452_29	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-2120452_29	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2120452_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2120452_30	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-2120452_30	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-2120452_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2120452_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2120452_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2120452_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2120452_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-2120452_31	UniRef90	UniRef90_R8W4B0	HK97 family phage portal protein	NA
UHGV-2120452_31	eggNOG-mapper	1203606.HMPREF1526_00980	Portal protein	NA
UHGV-2120452_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2120452_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2120452_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2120452_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2120452_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2120452_32	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-2120452_32	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-2120452_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2120452_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2120452_32	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2120452_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-2120452_33	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-2120452_33	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2120452_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2120452_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2120452_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2120452_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2120452_34	PHROG	phrog_5223	neck protein	connector
UHGV-2120452_34	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-2120452_34	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-2120452_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2120452_35	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-2120452_35	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-2120452_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2120452_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2120452_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2120452_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2120452_36	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-2120452_36	Structural annotation	PF05657	NA	NA
UHGV-2120452_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2120452_37	Structural annotation	TIGR01725	NA	NA
UHGV-2120452_38	PHROG	phrog_88	major tail protein	tail
UHGV-2120452_38	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-2120452_38	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-2120452_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2120452_38	COG	COG5492	NA	NA
UHGV-2120452_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2120452_39	Structural annotation	PF11836	NA	NA
UHGV-2120452_40	PHROG	phrog_33680	NA	unknown function
UHGV-2120452_40	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-2120452_40	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-2120452_40	COG	COG5283	Phage-related tail protein	NA
UHGV-2120452_40	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-2120452_41	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-2120452_41	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-2120452_41	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-2120452_41	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-2120452_42	PHROG	phrog_26795	NA	unknown function
UHGV-2120452_42	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-2120452_42	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2120452_43	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-2120452_45	Structural annotation	PF10651	NA	NA
UHGV-2120452_47	PHROG	phrog_10898	NA	unknown function
UHGV-2120452_47	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-2120452_47	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-2120452_47	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-2120452_47	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-2120452_48	PHROG	phrog_10898	NA	unknown function
UHGV-2120452_48	Structural annotation	PF16408, NF033510	NA	NA
UHGV-2120452_49	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-2120452_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2120452_50	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-2120452_50	UniRef90	UniRef90_UPI000834AF98	NA	NA
UHGV-2120452_50	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-2120452_50	Pfam	PF19789	NA	DUF6273
UHGV-2120452_50	Structural annotation	PF19789	NA	NA
UHGV-2120452_52	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-2120452_52	Structural annotation	PF10618	NA	NA
UHGV-2120452_54	PHROG	phrog_937	hemolysin	other
UHGV-2120452_55	PHROG	phrog_443	holin	lysis
UHGV-2120452_55	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-2120452_55	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-2120452_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2120452_55	Structural annotation	PF16945	NA	NA
UHGV-2120452_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2120452_56	PHROG	phrog_1794	amidase	lysis
UHGV-2120452_56	UniRef90	UniRef90_UPI001570B791	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2120452_56	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-2120452_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2120452_56	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2120452_56	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2120452_57	Structural annotation	PF16509, MF_00245, NF008895, COG2739	NA	NA
UHGV-2120452_59	PHROG	phrog_16490	NA	unknown function
UHGV-2120452_59	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-2120452_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2120452_61	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-2120452_61	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-2120452_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2120452_62	PHROG	phrog_95	integrase	integration and excision
UHGV-2120452_62	UniRef90	UniRef90_A0A417BWL2	Recombinase family protein	NA
UHGV-2120452_62	eggNOG-mapper	1121344.JHZO01000001_gene439	resolvase	NA
UHGV-2120452_62	Pfam	PF07508	Recombinase	Recombinase
UHGV-2120452_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2120452_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2120452_62	Structural annotation	PF07508, PF09454, NF041201	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2120452	Yes	35,753 bps	59.57%	100.00%	0.9825
UHGV-0111028	No	24,764 bps	60.28%	67.28%	0.9828
UHGV-0154409	No	15,833 bps	58.42%	42.02%	0.9806