vOTU-059433

Overview

No. of genomes 24

Genome length 36,453 bps

Completeness 100.00% (complete)

Host Lawsonibacter sp902363045

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-059433
Number of genomes	24
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00633 › vGENUS-16900 › vSUBGEN-30914 › vOTU-059433
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Lawsonibacter › Lawsonibacter sp902363045
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2165731
BioSample	SAMEA3449360
Genome length	36,453 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	56
CDS density	94.20%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2165731_1	UniRef90	UniRef90_U2R3A7	NA	NA
UHGV-2165731_1	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2165731_1	Structural annotation	PF04448	NA	NA
UHGV-2165731_4	PHROG	phrog_874	NA	unknown function
UHGV-2165731_4	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-2165731_4	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-2165731_4	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2165731_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2165731_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2165731_6	UniRef90	UniRef90_A0A399SRI1	XRE family transcriptional regulator	NA
UHGV-2165731_6	eggNOG-mapper	1116232.AHBF01000152_gene8577	sequence-specific DNA binding	NA
UHGV-2165731_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165731_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2165731_7	PHROG	phrog_31029	NA	unknown function
UHGV-2165731_9	PHROG	phrog_22543	NA	unknown function
UHGV-2165731_10	PHROG	phrog_774	NA	unknown function
UHGV-2165731_10	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2165731_11	PHROG	phrog_2717	NA	unknown function
UHGV-2165731_11	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-2165731_13	Structural annotation	NF041677	NA	NA
UHGV-2165731_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2165731_14	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-2165731_14	Structural annotation	PF01446, NF041486	NA	NA
UHGV-2165731_15	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-2165731_15	Structural annotation	PF14205	NA	NA
UHGV-2165731_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2165731_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2165731_16	UniRef90	UniRef90_UPI000FD8DD6E	HNH endonuclease	NA
UHGV-2165731_16	eggNOG-mapper	1145276.T479_20000	HNH nucleases	NA
UHGV-2165731_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2165731_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2165731_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2165731_17	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-2165731_17	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-2165731_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2165731_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2165731_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2165731_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2165731_17	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-2165731_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-2165731_18	UniRef90	UniRef90_A0A8G1TPJ1	Phage portal protein	NA
UHGV-2165731_18	eggNOG-mapper	1235798.C817_04583	Phage portal protein, HK97 family	NA
UHGV-2165731_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2165731_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2165731_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2165731_18	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2165731_19	KOfam	K06904	NA	NA
UHGV-2165731_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2165731_19	UniRef90	UniRef90_A0A373ZF38	HK97 family phage prohead protease	NA
UHGV-2165731_19	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-2165731_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2165731_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2165731_19	COG	COG3740	Phage head maturation protease	NA
UHGV-2165731_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2165731_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-2165731_20	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-2165731_20	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-2165731_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2165731_20	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2165731_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2165731_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2165731_20	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2165731_21	eggNOG-mapper	908340.HMPREF9406_2576	NA	NA
UHGV-2165731_22	PHROG	phrog_19734	NA	unknown function
UHGV-2165731_22	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-2165731_22	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-2165731_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2165731_23	UniRef90	UniRef90_UPI001D00FAFD	HK97 gp10 family phage protein	NA
UHGV-2165731_23	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-2165731_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2165731_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2165731_24	PHROG	phrog_78	tail terminator	connector
UHGV-2165731_24	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-2165731_24	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-2165731_25	PHROG	phrog_88	major tail protein	tail
UHGV-2165731_25	UniRef90	UniRef90_A0A1Y3R915	Phage tail protein	NA
UHGV-2165731_25	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-2165731_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2165731_25	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2165731_26	PHROG	phrog_709	NA	unknown function
UHGV-2165731_26	eggNOG-mapper	1226322.HMPREF1545_00122	NA	NA
UHGV-2165731_26	Structural annotation	PF11836	NA	NA
UHGV-2165731_27	PHROG	phrog_23464	NA	unknown function
UHGV-2165731_27	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-2165731_27	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-2165731_27	COG	COG5283	Phage-related tail protein	NA
UHGV-2165731_27	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-2165731_28	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-2165731_28	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2165731_29	PHROG	phrog_32744	NA	unknown function
UHGV-2165731_29	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-2165731_29	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-2165731_31	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-2165731_31	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-2165731_31	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2165731_31	Structural annotation	PF10651, COG5456	NA	NA
UHGV-2165731_32	PHROG	phrog_13589	NA	unknown function
UHGV-2165731_32	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-2165731_32	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2165731_35	PHROG	phrog_4105	NA	unknown function
UHGV-2165731_35	eggNOG-mapper	1687.BCOR_0969	NA	NA
UHGV-2165731_36	PHROG	phrog_1129	holin	lysis
UHGV-2165731_36	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-2165731_36	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2165731_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2165731_36	Structural annotation	PF06946	NA	NA
UHGV-2165731_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2165731_38	PHROG	phrog_435	endolysin	lysis
UHGV-2165731_38	UniRef90	UniRef90_A0A1G8HCT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2165731_38	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2165731_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2165731_38	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-2165731_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2165731_38	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-2165731_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2165731_39	UniRef90	UniRef90_A0A096DGF2	HTH cro/C1-type domain-containing protein	NA
UHGV-2165731_39	eggNOG-mapper	742738.HMPREF9460_00887	Helix-turn-helix XRE-family like proteins	NA
UHGV-2165731_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165731_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2165731_41	KOfam	K14059	int; integrase	NA
UHGV-2165731_41	PHROG	phrog_1	integrase	integration and excision
UHGV-2165731_41	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-2165731_41	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-2165731_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2165731_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2165731_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2165731_42	PHROG	phrog_37750	NA	unknown function
UHGV-2165731_42	UniRef90	UniRef90_UPI001D06EB78	NA	NA
UHGV-2165731_42	eggNOG-mapper	1087481.AGFX01000037_gene4346	NA	NA
UHGV-2165731_42	Structural annotation	PF16146, MF_00867, COG5007	NA	NA
UHGV-2165731_43	PHROG	phrog_87	metallo-protease	other
UHGV-2165731_43	UniRef90	UniRef90_UPI00189AFBD9	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2165731_43	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-2165731_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2165731_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2165731_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2165731_44	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2165731_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2165731_44	UniRef90	UniRef90_UPI00195603C9	helix-turn-helix domain-containing protein	NA
UHGV-2165731_44	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-2165731_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165731_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2165731_44	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2165731_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2165731_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2165731_45	UniRef90	UniRef90_A0A2K9P4T7	Helix-turn-helix domain protein	NA
UHGV-2165731_45	eggNOG-mapper	938278.CAJO01000073_gene1356	Helix-turn-helix XRE-family like proteins	NA
UHGV-2165731_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2165731_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2165731_46	PHROG	phrog_6058	NA	unknown function
UHGV-2165731_46	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-2165731_46	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2165731_49	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2165731_49	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-2165731_49	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-2165731_49	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2165731_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2165731_49	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-2165731_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2165731_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2165731_50	UniRef90	UniRef90_A0A1Y4C806	DNA helicase	NA
UHGV-2165731_50	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-2165731_50	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2165731_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2165731_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-2165731_50	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-2165731_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2165731_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2165731_51	UniRef90	UniRef90_UPI001F3C1DB2	ParA family protein	NA
UHGV-2165731_51	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-2165731_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-2165731_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2165731_51	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2165731_52	PHROG	phrog_15609	NA	unknown function
UHGV-2165731_52	UniRef90	UniRef90_UPI001246A313	NA	NA
UHGV-2165731_52	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-2165731_52	Pfam	PF11300	NA	DUF3102
UHGV-2165731_52	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2165731_52	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2165731_53	PHROG	phrog_38338	NA	unknown function
UHGV-2165731_53	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-2165731_54	PHROG	phrog_8470	NA	unknown function
UHGV-2165731_54	UniRef90	UniRef90_UPI0018A02262	PcfJ domain-containing protein	NA
UHGV-2165731_54	eggNOG-mapper	693746.OBV_24010	PcfJ-like protein	NA
UHGV-2165731_54	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2165731_54	Structural annotation	PF14284	NA	NA
UHGV-2165731_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2165731_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2165731_55	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-2165731_55	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-2165731_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2165731_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2165731_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2165731_55	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2165731_55	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2165731	Yes	36,453 bps	58.60%	100.00%	0.9789
UHGV-0436471	No	35,676 bps	58.58%	99.90%	0.9756
UHGV-2065622	No	34,077 bps	58.51%	98.51%	0.9767
UHGV-0205007	No	31,511 bps	58.94%	91.09%	0.9723
UHGV-1487741	No	27,933 bps	58.95%	80.75%	0.9785
UHGV-1524073	No	25,855 bps	57.90%	74.74%	0.9776
UHGV-0875842	No	24,974 bps	57.17%	72.19%	0.9776
UHGV-1951735	No	23,257 bps	57.20%	67.23%	0.9733
UHGV-1463726	No	22,503 bps	58.24%	65.05%	0.9810
UHGV-1421097	No	21,061 bps	57.95%	60.88%	0.9805
UHGV-2194197	No	19,341 bps	60.49%	53.51%	0.9752
UHGV-1479111	No	18,324 bps	57.92%	52.97%	0.9810
UHGV-0947729	No	18,652 bps	60.74%	51.58%	0.9757
UHGV-2227557	No	17,595 bps	57.49%	50.86%	0.9767
UHGV-1590218	No	17,048 bps	57.21%	45.82%	0.9784
UHGV-0055017	No	14,442 bps	57.67%	41.75%	0.9802
UHGV-1967056	No	14,298 bps	60.90%	41.33%	0.9809
UHGV-1847242	No	13,189 bps	57.64%	38.13%	0.9807
UHGV-2199211	No	13,337 bps	57.25%	36.75%	0.9809
UHGV-0992717	No	12,895 bps	57.35%	35.56%	0.9796
UHGV-1812399	No	12,735 bps	57.22%	34.05%	0.9818
UHGV-0875846	No	11,757 bps	61.88%	33.99%	0.9801
UHGV-1584620	No	11,860 bps	56.83%	31.73%	0.9797
UHGV-1624435	No	11,327 bps	57.21%	30.24%	0.9796