vOTU-059544

Overview

vOTU representative UHGV-1319964

No. of genomes 1

Genome length 38,026 bps

Completeness 99.90% (high-quality)

Host Pediococcus acidilactici

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-059544
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 › vSUBFAM-01102 › vGENUS-15470 › vSUBGEN-27011 › vOTU-059544
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Lactobacillaceae › Pediococcus › Pediococcus acidilactici
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1319964
BioSample	NA
Genome length	38,026 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	56
CDS density	88.18%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1319964_1	UniRef90	UniRef90_UPI001BD222C4	chromosome segregation protein SMC	NA
UHGV-1319964_2	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1319964_2	UniRef90	UniRef90_A0A829WM04	Single-stranded DNA-binding protein	NA
UHGV-1319964_2	eggNOG-mapper	278197.PEPE_1022	ERF superfamily	NA
UHGV-1319964_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-1319964_2	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1319964_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1319964_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1319964_4	UniRef90	UniRef90_D2ELA4	Single-stranded DNA-binding protein	NA
UHGV-1319964_4	eggNOG-mapper	862514.HMPREF0623_0274	Single-strand binding protein family	NA
UHGV-1319964_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1319964_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1319964_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1319964_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1319964_4	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1319964_5	PHROG	phrog_398	NA	unknown function
UHGV-1319964_5	UniRef90	UniRef90_UPI0018A138D5	putative HNHc nuclease	NA
UHGV-1319964_5	eggNOG-mapper	278197.PEPE_1020	Putative HNHc nuclease	NA
UHGV-1319964_5	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1319964_7	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1319964_7	UniRef90	UniRef90_UPI00132FF4FD	conserved phage C-terminal domain-containing protein	NA
UHGV-1319964_7	eggNOG-mapper	1194526.A284_08025	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1319964_7	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1319964_7	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1319964_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1319964_7	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-1319964_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1319964_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1319964_8	UniRef90	UniRef90_D2ELA1	IstB_IS21 domain-containing protein	NA
UHGV-1319964_8	eggNOG-mapper	278197.PEPE_1018	IstB-like ATP binding protein	NA
UHGV-1319964_8	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1319964_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1319964_8	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1319964_10	PHROG	phrog_32460	NA	unknown function
UHGV-1319964_10	UniRef90	UniRef90_UPI0013294476	RNA polymerase subunit sigma-70	NA
UHGV-1319964_10	Structural annotation	PF13936, PF13384, NF040595	NA	NA
UHGV-1319964_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1319964_11	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1319964_11	UniRef90	UniRef90_D2EM15	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1319964_11	eggNOG-mapper	278197.PEPE_1016	Endodeoxyribonuclease RusA	NA
UHGV-1319964_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1319964_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1319964_11	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1319964_12	PHROG	phrog_31960	NA	unknown function
UHGV-1319964_13	PHROG	phrog_29956	NA	unknown function
UHGV-1319964_13	UniRef90	UniRef90_A0A1L6HAR7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1319964_15	PHROG	phrog_121	NA	unknown function
UHGV-1319964_15	UniRef90	UniRef90_UPI001869E03C	NA	NA
UHGV-1319964_15	eggNOG-mapper	1071400.LBUCD034_1588	NA	NA
UHGV-1319964_15	Pfam	PF07852	NA	DUF1642
UHGV-1319964_15	Structural annotation	PF07852	NA	NA
UHGV-1319964_17	PHROG	phrog_4074	NA	unknown function
UHGV-1319964_17	UniRef90	UniRef90_A8ASM5	Gp36	NA
UHGV-1319964_17	eggNOG-mapper	272626.lin2411	NA	NA
UHGV-1319964_19	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1319964_19	UniRef90	UniRef90_UPI00140FDEB3	RNA polymerase subunit sigma-70	NA
UHGV-1319964_19	eggNOG-mapper	278197.PEPE_0777	Transcriptional regulator, ArpU family	NA
UHGV-1319964_19	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1319964_19	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-1319964_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1319964_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1319964_20	UniRef90	UniRef90_D2EM10	Putative terminase small subunit	NA
UHGV-1319964_20	eggNOG-mapper	1154757.Q5C_03085	Terminase small subunit	NA
UHGV-1319964_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1319964_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1319964_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1319964_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1319964_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1319964_21	UniRef90	UniRef90_D2EM09	Phage terminase, large subunit, PBSX family	NA
UHGV-1319964_21	eggNOG-mapper	568703.LGG_01125	Terminase RNAseH like domain	NA
UHGV-1319964_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1319964_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1319964_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1319964_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1319964_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1319964_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1319964_22	UniRef90	UniRef90_UPI001E50AA38	phage portal protein	NA
UHGV-1319964_22	eggNOG-mapper	278197.PEPE_0783	Phage portal protein	NA
UHGV-1319964_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1319964_22	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1319964_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1319964_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1319964_23	UniRef90	UniRef90_A0A1L6H9K1	Phage head morphogenesis protein	NA
UHGV-1319964_23	eggNOG-mapper	278197.PEPE_0784	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-1319964_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1319964_23	COG	COG2369	NA	NA
UHGV-1319964_23	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1319964_24	PHROG	phrog_2932	head scaffolding protein	head and packaging
UHGV-1319964_24	UniRef90	UniRef90_UPI00132F75A0	NA	NA
UHGV-1319964_24	eggNOG-mapper	1423775.BAMN01000027_gene68	NA	NA
UHGV-1319964_24	Pfam	PF14265	NA	DUF4355
UHGV-1319964_24	Structural annotation	PF14265	NA	NA
UHGV-1319964_25	PHROG	phrog_30620	NA	unknown function
UHGV-1319964_25	UniRef90	UniRef90_A0A1L6HAM9	N4-gp56 family major capsid protein	NA
UHGV-1319964_25	eggNOG-mapper	201846.B5SP31_9CAUD	peptidase activity	NA
UHGV-1319964_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1319964_25	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1319964_26	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1319964_26	UniRef90	UniRef90_UPI001BD4F683	Ig-like domain-containing protein	NA
UHGV-1319964_26	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1319964_26	Structural annotation	PF02368, TIGR04225	NA	NA
UHGV-1319964_27	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1319964_27	UniRef90	UniRef90_UPI0018AAB94F	phage head-tail connector protein	NA
UHGV-1319964_27	eggNOG-mapper	278197.PEPE_0789	Phage gp6-like head-tail connector protein	NA
UHGV-1319964_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1319964_27	Structural annotation	PF05135	NA	NA
UHGV-1319964_28	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1319964_28	eggNOG-mapper	278197.PEPE_0790	NA	NA
UHGV-1319964_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1319964_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1319964_29	UniRef90	UniRef90_D2EM01	Phage protein, HK97 gp10 family	NA
UHGV-1319964_29	eggNOG-mapper	278197.PEPE_0791	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1319964_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1319964_29	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1319964_29	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1319964_30	PHROG	phrog_238	major tail protein	tail
UHGV-1319964_30	UniRef90	UniRef90_A0A1L6H9V3	Phage major tail protein, TP901-1 family	NA
UHGV-1319964_30	eggNOG-mapper	1567453.A0A0A1ELH3_9CAUD	Phage major tail protein 2	NA
UHGV-1319964_30	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1319964_30	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1319964_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1319964_31	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1319964_31	PHROG	phrog_341	major tail protein	tail
UHGV-1319964_31	UniRef90	UniRef90_UPI000B28EAE0	Ig-like domain-containing protein	NA
UHGV-1319964_31	eggNOG-mapper	945021.TEH_18020	Bacterial Ig-like domain 2	NA
UHGV-1319964_31	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1319964_31	COG	COG5492	NA	NA
UHGV-1319964_31	Structural annotation	PF02368, MF_04116, COG5492	NA	NA
UHGV-1319964_32	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1319964_32	UniRef90	UniRef90_A0A0A1ER95	Putative tapemeasure chaperone protein	NA
UHGV-1319964_32	eggNOG-mapper	278197.PEPE_0795	Phage tail assembly chaperone protein, TAC	NA
UHGV-1319964_32	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1319964_32	Structural annotation	PF12363	NA	NA
UHGV-1319964_33	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-1319964_33	UniRef90	UniRef90_Q037E6	NA	NA
UHGV-1319964_33	eggNOG-mapper	568703.LGG_01136	NA	NA
UHGV-1319964_34	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-1319964_34	UniRef90	UniRef90_UPI00186AB8A2	phage tail tape measure protein	NA
UHGV-1319964_34	eggNOG-mapper	278197.PEPE_0797	Phage tail tape measure protein	NA
UHGV-1319964_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1319964_34	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1319964_34	COG	COG5283	Phage-related tail protein	NA
UHGV-1319964_34	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1319964_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1319964_35	UniRef90	UniRef90_A0A1L6H9H9	Phage tail protein	NA
UHGV-1319964_35	eggNOG-mapper	278197.PEPE_0798	phage tail	NA
UHGV-1319964_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-1319964_35	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1319964_36	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1319964_36	PHROG	phrog_3558	tail protein	tail
UHGV-1319964_36	UniRef90	UniRef90_A0A1L6H9Q3	Peptidase M23	NA
UHGV-1319964_36	eggNOG-mapper	278197.PEPE_0799	Prophage endopeptidase tail	NA
UHGV-1319964_36	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1319964_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1319964_36	COG	COG3953	SLT domain protein	NA
UHGV-1319964_36	Structural annotation	PF14594, PF01551, PF06605, TIGR01665, COG4379, COG0739	NA	NA
UHGV-1319964_38	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1319964_38	PHROG	phrog_13515	phosphodiesterase	other
UHGV-1319964_38	UniRef90	UniRef90_A0A8D4N9R0	GP-PDE domain-containing protein	NA
UHGV-1319964_38	eggNOG-mapper	1136177.KCA1_1100	Calcineurin-like phosphoesterase	NA
UHGV-1319964_38	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-1319964_39	PHROG	phrog_1009	NA	unknown function
UHGV-1319964_40	PHROG	phrog_13404	holin	lysis
UHGV-1319964_40	UniRef90	UniRef90_A0A6L5AGX6	Holin	NA
UHGV-1319964_40	eggNOG-mapper	862514.HMPREF0623_0308	COG5546 Small integral membrane protein	NA
UHGV-1319964_40	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1319964_40	COG	COG5546	NA	NA
UHGV-1319964_41	KOfam	K07273	acm; lysozyme	NA
UHGV-1319964_41	PHROG	phrog_3393	endolysin	lysis
UHGV-1319964_41	UniRef90	UniRef90_A0A1L6HAP6	1,4-beta-N-acetylmuramidase	NA
UHGV-1319964_41	eggNOG-mapper	278197.PEPE_0807	Glycosyl hydrolases family 25	NA
UHGV-1319964_41	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1319964_41	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1319964_42	KOfam	K14059	int; integrase	NA
UHGV-1319964_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1319964_42	UniRef90	UniRef90_A0A829WTJ1	Site-specific integrase	NA
UHGV-1319964_42	eggNOG-mapper	334390.LAF_0657	Belongs to the 'phage' integrase family	NA
UHGV-1319964_42	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1319964_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1319964_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1319964_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1319964_44	eggNOG-mapper	1033738.CAEP01000074_gene578	LysM domain	NA
UHGV-1319964_44	COG	COG1388	LysM repeat	NA
UHGV-1319964_45	PHROG	phrog_25932	NA	unknown function
UHGV-1319964_45	UniRef90	UniRef90_A0A0N9YQU0	SmpA_OmlA domain-containing protein	NA
UHGV-1319964_45	eggNOG-mapper	911104.AEKT01000044_gene1032	NA	NA
UHGV-1319964_46	PHROG	phrog_87	metallo-protease	other
UHGV-1319964_46	UniRef90	UniRef90_UPI00159C3FD8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1319964_46	eggNOG-mapper	220668.lp_2449	IrrE N-terminal-like domain	NA
UHGV-1319964_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1319964_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1319964_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1319964_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1319964_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1319964_47	UniRef90	UniRef90_A0A0R2KYK1	HTH cro/C1-type domain-containing protein	NA
UHGV-1319964_47	eggNOG-mapper	701521.PECL_878	Helix-turn-helix XRE-family like proteins	NA
UHGV-1319964_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1319964_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1319964_47	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1319964_48	PHROG	phrog_30301	NA	unknown function
UHGV-1319964_51	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1319964_51	UniRef90	UniRef90_D2EM25	Phage regulatory protein, Rha family	NA
UHGV-1319964_51	eggNOG-mapper	278197.PEPE_0752	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1319964_51	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1319964_51	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1319964_51	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1319964_51	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1319964_51	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-1319964_52	PHROG	phrog_823	NA	unknown function
UHGV-1319964_52	UniRef90	UniRef90_A0A833LDD8	NA	NA
UHGV-1319964_52	eggNOG-mapper	1499680.CCFE01000025_gene3181	NA	NA
UHGV-1319964_52	Pfam	PF05595	NA	DUF771
UHGV-1319964_52	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-1319964_52	Structural annotation	PF05595, COG4707	NA	NA
UHGV-1319964_54	PHROG	phrog_2211	NA	unknown function
UHGV-1319964_54	eggNOG-mapper	226185.EF_2847	NA	NA
UHGV-1319964_55	UniRef90	UniRef90_UPI000FEEE73D	helix-turn-helix domain-containing protein	NA
UHGV-1319964_55	eggNOG-mapper	1069534.LRC_07130	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1319964_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1319964_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1319964_55	Structural annotation	PF13443, NF041951, COG3655	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1319964	Yes	38,026 bps	40.20%	99.90%	0.9686