vOTU-060000

Overview

vOTU representative UHGV-0208891

No. of genomes 1

Genome length 46,008 bps

Completeness 99.90% (high-quality)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-060000
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 › vSUBFAM-06609 › vGENUS-16916 › vSUBGEN-30971 › vOTU-060000
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0208891
BioSample	NA
Genome length	46,008 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	70
CDS density	89.82%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208891_1	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0208891_1	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0208891_2	KOfam	K14059	int; integrase	NA
UHGV-0208891_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0208891_2	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0208891_2	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0208891_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0208891_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0208891_2	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0208891_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0208891_3	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0208891_4	eggNOG-mapper	1408323.JQKK01000014_gene78	DNA/RNA non-specific endonuclease	NA
UHGV-0208891_4	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0208891_4	Structural annotation	PF02805	NA	NA
UHGV-0208891_7	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0208891_9	Structural annotation	PF09943	NA	NA
UHGV-0208891_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208891_10	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-0208891_10	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0208891_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0208891_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0208891_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0208891_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0208891_11	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208891_11	UniRef90	UniRef90_A0A0M2NHZ6	NA	NA
UHGV-0208891_11	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0208891_11	Structural annotation	PF17375	NA	NA
UHGV-0208891_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0208891_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0208891_12	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0208891_12	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-0208891_12	Pfam	PF03837	RecT family	RecT
UHGV-0208891_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0208891_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0208891_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0208891_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0208891_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0208891_13	UniRef90	UniRef90_R6LVK0	Single-stranded DNA-binding protein	NA
UHGV-0208891_13	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0208891_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0208891_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0208891_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0208891_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0208891_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0208891_14	PHROG	phrog_15768	NA	unknown function
UHGV-0208891_14	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0208891_14	Pfam	PF19808	NA	DUF6291
UHGV-0208891_15	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0208891_15	eggNOG-mapper	498761.HM1_0053	HNH endonuclease	NA
UHGV-0208891_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0208891_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0208891_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0208891_16	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-0208891_16	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0208891_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0208891_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0208891_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0208891_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0208891_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0208891_19	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0208891_19	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0208891_19	Pfam	PF06356	NA	DUF1064
UHGV-0208891_19	Structural annotation	PF06356	NA	NA
UHGV-0208891_22	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0208891_22	PHROG	phrog_30550	NA	unknown function
UHGV-0208891_22	UniRef90	UniRef90_UPI001486382B	cell wall hydrolase	NA
UHGV-0208891_22	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0208891_22	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0208891_22	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0208891_23	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0208891_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0208891_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0208891_25	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0208891_25	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0208891_25	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0208891_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0208891_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0208891_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0208891_26	PHROG	phrog_924	NA	unknown function
UHGV-0208891_26	UniRef90	UniRef90_A0A6M3M503	NA	NA
UHGV-0208891_26	Pfam	PF04448	NA	DUF551
UHGV-0208891_26	Structural annotation	PF04448	NA	NA
UHGV-0208891_30	KOfam	K14059	int; integrase	NA
UHGV-0208891_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0208891_30	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0208891_30	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0208891_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0208891_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0208891_30	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0208891_32	Structural annotation	PF17917	NA	NA
UHGV-0208891_33	PHROG	phrog_15863	NA	unknown function
UHGV-0208891_33	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0208891_33	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0208891_33	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0208891_33	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0208891_36	Structural annotation	PF16677	NA	NA
UHGV-0208891_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0208891_37	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0208891_37	UniRef90	UniRef90_A0A1Y3RJJ5	Terminase_3 domain-containing protein	NA
UHGV-0208891_37	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0208891_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0208891_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0208891_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0208891_38	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0208891_38	Structural annotation	PF11650	NA	NA
UHGV-0208891_40	PHROG	phrog_156	portal protein	head and packaging
UHGV-0208891_40	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0208891_40	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0208891_41	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0208891_41	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0208891_41	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0208891_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0208891_43	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0208891_43	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0208891_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0208891_44	PHROG	phrog_5717	tail protein	tail
UHGV-0208891_44	UniRef90	UniRef90_A2F9B0	Gp1-related protein	NA
UHGV-0208891_44	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0208891_44	COG	COG4675	Phage tail collar domain	NA
UHGV-0208891_44	Structural annotation	COG4675	NA	NA
UHGV-0208891_45	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0208891_45	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0208891_45	eggNOG-mapper	1232452.BAIB02000007_gene1608	Collagen triple helix repeat	NA
UHGV-0208891_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0208891_45	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0208891_46	PHROG	phrog_937	hemolysin	other
UHGV-0208891_46	eggNOG-mapper	742740.HMPREF9474_03172	NA	NA
UHGV-0208891_47	PHROG	phrog_881	holin	lysis
UHGV-0208891_47	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0208891_47	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0208891_47	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0208891_47	Structural annotation	PF16938	NA	NA
UHGV-0208891_48	PHROG	phrog_14030	NA	unknown function
UHGV-0208891_48	UniRef90	UniRef90_UPI00164AB959	peptidoglycan-binding protein	NA
UHGV-0208891_48	eggNOG-mapper	887325.HMPREF0381_0057	Putative cell wall binding repeat	NA
UHGV-0208891_48	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0208891_48	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0208891_48	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0208891_50	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-0208891_51	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0208891_56	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0208891_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208891_56	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0208891_58	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0208891_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208891_58	UniRef90	UniRef90_A0A1S9UVB5	Transcriptional regulator	NA
UHGV-0208891_58	eggNOG-mapper	1121085.AUCI01000010_gene502	Helix-turn-helix XRE-family like proteins	NA
UHGV-0208891_58	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0208891_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208891_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208891_58	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0208891_59	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0208891_59	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0208891_59	UniRef90	UniRef90_UPI000DA60073	helix-turn-helix domain-containing protein	NA
UHGV-0208891_59	eggNOG-mapper	1449126.JQKL01000003_gene1714	Helix-turn-helix XRE-family like proteins	NA
UHGV-0208891_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208891_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208891_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0208891_61	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0208891_61	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0208891_61	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0208891_61	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0208891_62	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0208891_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208891_62	UniRef90	UniRef90_A0A0U5NUQ5	Helix-turn-helix protein	NA
UHGV-0208891_62	eggNOG-mapper	445972.ANACOL_01815	Transcriptional	NA
UHGV-0208891_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208891_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208891_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0208891_63	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0208891_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208891_63	UniRef90	UniRef90_A0A3A9I6A9	XRE family transcriptional regulator	NA
UHGV-0208891_63	eggNOG-mapper	1077144.AGFF01000017_gene2717	sequence-specific DNA binding	NA
UHGV-0208891_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208891_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208891_63	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0208891_64	PHROG	phrog_4973	NA	unknown function
UHGV-0208891_64	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0208891_64	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0208891_64	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0208891_64	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0208891_67	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0208891_67	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0208891_67	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0208891_67	Pfam	PF06378	NA	DUF1071
UHGV-0208891_67	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0208891_68	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0208891_68	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0208891_68	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0208891_68	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0208891_69	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0208891_69	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0208891_69	UniRef90	UniRef90_A0A8J7VJS5	Single-stranded DNA-binding protein	NA
UHGV-0208891_69	eggNOG-mapper	552398.HMPREF0866_02510	Single-stranded DNA-binding protein	NA
UHGV-0208891_69	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0208891_69	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0208891_69	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0208891_69	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0208891_69	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0208891_70	PHROG	phrog_16304	NA	unknown function
UHGV-0208891_70	Pfam	PF19808	NA	DUF6291

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0208891	Yes	46,008 bps	58.90%	99.90%	0.9788