vOTU-060314

Overview

vOTU representative UHGV-0208860

No. of genomes 2

Genome length 50,543 bps

Completeness 99.90% (high-quality)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-060314
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-03105 › vGENUS-04265 › vSUBGEN-43315 › vOTU-060314
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0208860
BioSample	NA
Genome length	50,543 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	78
CDS density	90.61%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208860_3	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208860_3	UniRef90	UniRef90_U7TTI1	VRR-NUC domain-containing protein	NA
UHGV-0208860_3	eggNOG-mapper	1121929.KB898702_gene248	Archaeal holliday junction resolvase (hjc)	NA
UHGV-0208860_3	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0208860_3	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0208860_3	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0208860_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0208860_4	UniRef90	UniRef90_UPI00137B3314	NA	NA
UHGV-0208860_4	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-0208860_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0208860_5	PHROG	phrog_18716	NA	unknown function
UHGV-0208860_5	UniRef90	UniRef90_A0A1I3PYT0	NA	NA
UHGV-0208860_5	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0208860_5	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0208860_5	Structural annotation	PF18909	NA	NA
UHGV-0208860_7	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0208860_7	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0208860_7	UniRef90	UniRef90_R5ARF1	Cytidine/deoxycytidylate deaminase family protein	NA
UHGV-0208860_7	eggNOG-mapper	877414.ATWA01000117_gene2206	MafB19-like deaminase	NA
UHGV-0208860_7	PADLOC	dCTPase	NA	NA
UHGV-0208860_7	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0208860_7	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0208860_7	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0208860_8	UniRef90	UniRef90_A0A1M5Y6F6	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0208860_8	eggNOG-mapper	1410617.JHXH01000019_gene1115	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0208860_8	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0208860_8	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0208860_9	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0208860_9	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0208860_9	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0208860_11	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0208860_11	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-0208860_11	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0208860_11	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0208860_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0208860_13	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208860_13	UniRef90	UniRef90_UPI0004792FE7	HNH endonuclease	NA
UHGV-0208860_13	eggNOG-mapper	10717.Q38456_BPPH1	HNH endonuclease	NA
UHGV-0208860_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0208860_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0208860_14	UniRef90	UniRef90_W0FMH0	Phage terminase small subunit	NA
UHGV-0208860_14	eggNOG-mapper	1469948.JPNB01000001_gene688	Phage terminase, small subunit	NA
UHGV-0208860_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0208860_14	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0208860_14	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0208860_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0208860_15	PHROG	phrog_10517	terminase large subunit	head and packaging
UHGV-0208860_15	UniRef90	UniRef90_A0A7X7EMS7	Terminase large subunit (Fragment)	NA
UHGV-0208860_15	eggNOG-mapper	1286171.EAL2_c19710	Phage Terminase	NA
UHGV-0208860_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0208860_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0208860_16	UniRef90	UniRef90_A0A6N7VK86	Terminase	NA
UHGV-0208860_16	eggNOG-mapper	864563.HMPREF9166_0111	LAGLIDADG-like domain	NA
UHGV-0208860_16	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0208860_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0208860_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0208860_16	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0208860_16	Structural annotation	PF20441, PF05203, PF03354, MF_04145, MF_01420, NF005852, TIGR01547, COG4626	NA	NA
UHGV-0208860_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0208860_17	UniRef90	UniRef90_A0A1Q6PTQ2	Phage portal protein	NA
UHGV-0208860_17	eggNOG-mapper	545697.HMPREF0216_00924	Phage portal protein, HK97 family	NA
UHGV-0208860_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0208860_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0208860_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0208860_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0208860_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0208860_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0208860_18	UniRef90	UniRef90_A0A2V2FK72	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0208860_18	eggNOG-mapper	936572.HMPREF1148_0665	Belongs to the peptidase S14 family	NA
UHGV-0208860_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0208860_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0208860_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0208860_19	UniRef90	UniRef90_A0A143XDF8	Phage capsid family protein	NA
UHGV-0208860_19	eggNOG-mapper	397288.C806_00801	Phage capsid family	NA
UHGV-0208860_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0208860_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0208860_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0208860_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0208860_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0208860_20	UniRef90	UniRef90_A0A7X7FKE4	Phage gp6-like head-tail connector protein	NA
UHGV-0208860_20	eggNOG-mapper	69328.PVLB_20850	Phage gp6-like head-tail connector protein	NA
UHGV-0208860_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0208860_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0208860_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0208860_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0208860_21	UniRef90	UniRef90_A0A7C6BLN9	Phage head closure protein	NA
UHGV-0208860_21	eggNOG-mapper	697281.Mahau_2908	Phage head-tail joining protein	NA
UHGV-0208860_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0208860_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0208860_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0208860_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0208860_22	Structural annotation	PF05657	NA	NA
UHGV-0208860_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0208860_23	UniRef90	UniRef90_A0A6M3K0V5	Putative tail protein	NA
UHGV-0208860_23	eggNOG-mapper	1121342.AUCO01000004_gene643	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0208860_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0208860_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0208860_23	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0208860_24	PHROG	phrog_88	major tail protein	tail
UHGV-0208860_24	UniRef90	UniRef90_A0A7C6BMC6	Phage tail protein	NA
UHGV-0208860_24	eggNOG-mapper	1382315.JPOI01000001_gene276	Phage major tail protein phi13	NA
UHGV-0208860_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0208860_24	COG	COG5276	NA	NA
UHGV-0208860_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0208860_25	eggNOG-mapper	1460635.JCM19038_2814	NA	NA
UHGV-0208860_27	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0208860_27	UniRef90	UniRef90_A0A7C6FQN7	Phage tail tape measure protein	NA
UHGV-0208860_27	eggNOG-mapper	1289596.M1PKM6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0208860_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0208860_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0208860_27	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0208860_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0208860_28	UniRef90	UniRef90_A0A7C6FS63	Phage tail protein	NA
UHGV-0208860_28	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0208860_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-0208860_28	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0208860_29	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0208860_29	eggNOG-mapper	1423775.BAMN01000009_gene385	Phage minor structural protein	NA
UHGV-0208860_29	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0208860_29	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0208860_29	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0208860_29	COG	COG4926	Phage-related protein	NA
UHGV-0208860_30	Structural annotation	PF16640	NA	NA
UHGV-0208860_31	PHROG	phrog_35892	NA	unknown function
UHGV-0208860_31	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0208860_33	PHROG	phrog_1493	endolysin	lysis
UHGV-0208860_33	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0208860_33	eggNOG-mapper	294382.Q5YA51_9CAUD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208860_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0208860_33	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0208860_33	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0208860_34	UniRef90	UniRef90_A0A2V2FMG9	CTP synthase	NA
UHGV-0208860_35	eggNOG-mapper	1499683.CCFF01000016_gene802	NA	NA
UHGV-0208860_40	KOfam	K14059	int; integrase	NA
UHGV-0208860_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0208860_40	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-0208860_40	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0208860_40	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0208860_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0208860_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0208860_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0208860_41	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0208860_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208860_41	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0208860_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0208860_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0208860_44	UniRef90	UniRef90_A0A3R6KRX8	XRE family transcriptional regulator	NA
UHGV-0208860_44	eggNOG-mapper	1235835.C814_00826	DNA-binding helix-turn-helix protein	NA
UHGV-0208860_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208860_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208860_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0208860_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0208860_48	UniRef90	UniRef90_UPI000C17EB5B	phage antirepressor KilAC domain-containing protein	NA
UHGV-0208860_48	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0208860_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0208860_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0208860_48	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0208860_51	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0208860_51	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0208860_51	UniRef90	UniRef90_UPI00195929F2	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0208860_51	eggNOG-mapper	321327.CYA_2410	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	NA
UHGV-0208860_51	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0208860_51	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0208860_51	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0208860_51	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0208860_52	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0208860_52	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0208860_52	UniRef90	UniRef90_UPI001D0EEF79	DEAD/DEAH box helicase	NA
UHGV-0208860_52	eggNOG-mapper	1126885.I3VYY6_9CAUD	helicase activity	NA
UHGV-0208860_52	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0208860_52	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0208860_52	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0208860_54	eggNOG-mapper	887325.HMPREF0381_0368	NA	NA
UHGV-0208860_55	PHROG	phrog_23155	NA	unknown function
UHGV-0208860_55	eggNOG-mapper	478749.BRYFOR_07518	NA	NA
UHGV-0208860_55	Structural annotation	PF18897	NA	NA
UHGV-0208860_58	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0208860_61	Pfam	PF04448	NA	DUF551
UHGV-0208860_61	Structural annotation	NF041588	NA	NA
UHGV-0208860_70	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0208860_70	PHROG	phrog_11992	NA	unknown function
UHGV-0208860_70	UniRef90	UniRef90_A0A7X7FIV3	ZnF_CHCC domain-containing protein	NA
UHGV-0208860_70	eggNOG-mapper	1121936.AUHI01000005_gene2202	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0208860_70	PADLOC	drt-cluster192	DRT	DRT
UHGV-0208860_70	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0208860_70	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0208860_71	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0208860_71	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0208860_71	UniRef90	UniRef90_UPI000CCC167F	phage/plasmid primase, P4 family	NA
UHGV-0208860_71	eggNOG-mapper	1291050.JAGE01000002_gene3970	Phage plasmid primase, P4 family	NA
UHGV-0208860_71	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0208860_71	Pfam	PF19263	NA	DUF5906
UHGV-0208860_71	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0208860_71	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0208860_76	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0208860_76	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0208860_76	UniRef90	UniRef90_H2JIU8	Putative transcriptional regulator	NA
UHGV-0208860_76	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-0208860_76	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208860_76	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208860_76	Structural annotation	PF01381, NF041951, COG1476	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0208860	Yes	50,543 bps	56.31%	99.90%	0.9765
UHGV-0184124	No	50,543 bps	56.31%	99.90%	0.9724