vOTU-060768

Overview

vOTU representative UHGV-2068613

No. of genomes 1

Genome length 34,793 bps

Completeness 99.90% (high-quality)

Host Akkermansia muciniphila B

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-060768
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00082 › vSUBFAM-00340 › vGENUS-05151 › vSUBGEN-14273 › vOTU-060768
Host taxonomy	Bacteria › Verrucomicrobiota › Verrucomicrobiae › Verrucomicrobiales › Akkermansiaceae › Akkermansia › Akkermansia muciniphila B
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2068613
BioSample	NA
Genome length	34,793 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	52
CDS density	94.97%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2068613_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2068613_1	Structural annotation	PF18654, TIGR00606, COG0268	NA	NA
UHGV-2068613_2	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA
UHGV-2068613_3	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-2068613_9	Structural annotation	PF21190, TIGR03511, COG4935	NA	NA
UHGV-2068613_10	eggNOG-mapper	521674.Plim_2126	NA	NA
UHGV-2068613_10	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-2068613_10	Structural annotation	PF20911, MF_04133, NF041162, COG4397	NA	NA
UHGV-2068613_11	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-2068613_11	UniRef90	UniRef90_UPI001C023827	phage protease	NA
UHGV-2068613_11	eggNOG-mapper	794903.OPIT5_08310	P22 coat protein - gene protein 5	NA
UHGV-2068613_11	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-2068613_14	PHROG	phrog_113	portal protein	head and packaging
UHGV-2068613_14	UniRef90	UniRef90_A0A4Q5IVR1	NA	NA
UHGV-2068613_14	eggNOG-mapper	794903.OPIT5_08305	NA	NA
UHGV-2068613_14	Pfam	PF06074	NA	DUF935
UHGV-2068613_14	COG	COG4383	NA	NA
UHGV-2068613_15	PHROG	phrog_315	endolysin	lysis
UHGV-2068613_15	UniRef90	UniRef90_A0A2N8HHC6	PG_binding_3 domain-containing protein	NA
UHGV-2068613_15	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-2068613_15	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2068613_15	COG	COG3926	Lysozyme family protein	NA
UHGV-2068613_15	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-2068613_19	Structural annotation	PF05587, PF03388, COG3506	NA	NA
UHGV-2068613_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2068613_20	UniRef90	UniRef90_A0A1C7PDG0	p-loop containing nucleoside triphosphate hydrolase	NA
UHGV-2068613_20	eggNOG-mapper	411459.RUMOBE_01049	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-2068613_20	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-2068613_20	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-2068613_21	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-2068613_21	UniRef90	UniRef90_A0A8I0N2P9	Terminase small subunit protein	NA
UHGV-2068613_21	eggNOG-mapper	521000.PROVRETT_06006	NA	NA
UHGV-2068613_21	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-2068613_22	UniRef90	UniRef90_A0A4Q5IVQ1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-2068613_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2068613_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2068613_24	UniRef90	UniRef90_A0A8F1KFQ8	DNA helicase	NA
UHGV-2068613_24	eggNOG-mapper	349741.Amuc_1377	DnaB-like helicase C terminal domain	NA
UHGV-2068613_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2068613_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2068613_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-2068613_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2068613_25	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2068613_25	eggNOG-mapper	402626.Rpic_2326	ROK family	NA
UHGV-2068613_25	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-2068613_25	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-2068613_26	PHROG	phrog_631	NA	unknown function
UHGV-2068613_26	UniRef90	UniRef90_UPI001D184C64	adenylosuccinate synthase	NA
UHGV-2068613_26	eggNOG-mapper	1206545.S6CFA4_9CAUD	NA	NA
UHGV-2068613_26	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-2068613_28	PHROG	phrog_799	DNA methyltransferase	other
UHGV-2068613_28	UniRef90	UniRef90_A0A8F1HDK7	Class I SAM-dependent methyltransferase	NA
UHGV-2068613_28	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-2068613_28	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-2068613_28	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-2068613_31	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-2068613_31	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2068613_31	UniRef90	UniRef90_A0A2N8HIX1	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-2068613_31	eggNOG-mapper	367299.JOEE01000001_gene1963	NA	NA
UHGV-2068613_31	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-2068613_31	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2068613_32	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-2068613_32	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2068613_32	UniRef90	UniRef90_A0A2N8HIW0	YqaJ domain-containing protein	NA
UHGV-2068613_32	eggNOG-mapper	1215343.B488_04690	YqaJ-like viral recombinase domain	NA
UHGV-2068613_32	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2068613_32	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-2068613_33	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2068613_33	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2068613_33	UniRef90	UniRef90_A0A8F1KRS7	Recombinase RecT	NA
UHGV-2068613_33	eggNOG-mapper	548476.cauri_1962	RecT family	NA
UHGV-2068613_33	Pfam	PF03837	RecT family	RecT
UHGV-2068613_33	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2068613_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2068613_33	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2068613_40	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2068613_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2068613_40	UniRef90	UniRef90_A0A2N8HBV9	Peptidase_S24 domain-containing protein	NA
UHGV-2068613_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2068613_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2068613_42	UniRef90	UniRef90_A0A2N8HHC4	TM2 domain-containing protein	NA
UHGV-2068613_42	eggNOG-mapper	1408427.JADB01000010_gene1482	TM2 domain	NA
UHGV-2068613_42	Pfam	PF05154	TM2 domain	TM2
UHGV-2068613_42	COG	COG2314	NA	NA
UHGV-2068613_43	UniRef90	UniRef90_UPI001C0102F6	helix-turn-helix domain-containing protein	NA
UHGV-2068613_43	Structural annotation	PF21291, TIGR00270, COG1476	NA	NA
UHGV-2068613_46	UniRef90	UniRef90_UPI001C016FFA	helix-turn-helix domain-containing protein	NA
UHGV-2068613_49	PHROG	phrog_315	endolysin	lysis
UHGV-2068613_49	UniRef90	UniRef90_A0A2N8HHC6	PG_binding_3 domain-containing protein	NA
UHGV-2068613_49	eggNOG-mapper	349741.Amuc_1360	Glycosyl hydrolase 108	NA
UHGV-2068613_49	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2068613_49	COG	COG3926	Lysozyme family protein	NA
UHGV-2068613_49	Structural annotation	PF09374, NF040573, COG3926	NA	NA
UHGV-2068613_51	UniRef90	UniRef90_UPI001EDF593B	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2068613	Yes	34,793 bps	54.52%	99.90%	0.9680