vOTU-061060

Overview

vOTU representative UHGV-1391900

No. of genomes 9

Genome length 47,530 bps

Completeness 99.90% (high-quality)

Host Holdemanella

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-061060
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 › vSUBFAM-00170 › vGENUS-00088 › vSUBGEN-32770 › vOTU-061060
Host taxonomy	Bacteria › Firmicutes › Bacilli › Erysipelotrichales › Erysipelotrichaceae › Holdemanella
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1391900
BioSample	SAMEA4545398
Genome length	47,530 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	81
CDS density	88.42%
tRNA count	4
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1391900_1	KOfam	K07485	K07485; transposase	NA
UHGV-1391900_1	UniRef90	UniRef90_H1BBY8	DDE_Tnp_ISL3 domain-containing protein (Fragment)	NA
UHGV-1391900_1	eggNOG-mapper	999413.HMPREF1094_04504	NA	NA
UHGV-1391900_1	Pfam	PF01610	Transposase	DDE_Tnp_ISL3
UHGV-1391900_1	COG	COG3464	Transposase	NA
UHGV-1391900_2	eggNOG-mapper	518637.EUBIFOR_02547	NA	NA
UHGV-1391900_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1391900_3	PHROG	phrog_7698	endolysin	lysis
UHGV-1391900_3	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1391900_3	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1391900_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1391900_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1391900_3	Structural annotation	COG5632	NA	NA
UHGV-1391900_5	PHROG	phrog_443	holin	lysis
UHGV-1391900_5	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-1391900_5	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-1391900_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1391900_5	Structural annotation	PF16945	NA	NA
UHGV-1391900_7	PHROG	phrog_20016	NA	unknown function
UHGV-1391900_7	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-1391900_7	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1391900_7	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-1391900_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1391900_8	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-1391900_8	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1391900_13	PHROG	phrog_24451	NA	unknown function
UHGV-1391900_13	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-1391900_14	eggNOG-mapper	931276.Cspa_c07580	nuclear chromosome segregation	NA
UHGV-1391900_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1391900_14	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-1391900_15	PHROG	phrog_24103	NA	unknown function
UHGV-1391900_15	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-1391900_16	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-1391900_17	PHROG	phrog_15594	NA	unknown function
UHGV-1391900_17	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1391900_17	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1391900_18	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-1391900_19	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-1391900_20	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-1391900_21	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-1391900_21	Structural annotation	PF10651, COG5513	NA	NA
UHGV-1391900_22	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1391900_22	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1391900_22	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-1391900_22	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1391900_22	COG	COG4926	Phage-related protein	NA
UHGV-1391900_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1391900_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1391900_23	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-1391900_23	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1391900_23	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1391900_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-1391900_23	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1391900_24	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-1391900_24	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1391900_24	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-1391900_24	eggNOG-mapper	1314.HKU360_01215	Phage-related minor tail protein	NA
UHGV-1391900_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1391900_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1391900_24	COG	COG5283	Phage-related tail protein	NA
UHGV-1391900_24	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-1391900_26	Structural annotation	PF11836	NA	NA
UHGV-1391900_27	PHROG	phrog_88	major tail protein	tail
UHGV-1391900_27	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-1391900_27	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-1391900_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1391900_27	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1391900_28	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-1391900_28	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-1391900_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1391900_29	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1391900_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1391900_30	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-1391900_30	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-1391900_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1391900_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1391900_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1391900_31	PHROG	phrog_5223	neck protein	connector
UHGV-1391900_31	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-1391900_31	Structural annotation	TIGR01560	NA	NA
UHGV-1391900_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-1391900_32	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-1391900_32	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-1391900_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1391900_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1391900_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1391900_32	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1391900_33	KOfam	K06904	NA	NA
UHGV-1391900_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1391900_33	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-1391900_33	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-1391900_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1391900_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1391900_33	COG	COG3740	Phage head maturation protease	NA
UHGV-1391900_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1391900_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-1391900_34	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-1391900_34	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-1391900_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1391900_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1391900_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1391900_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1391900_35	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-1391900_35	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-1391900_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1391900_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1391900_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1391900_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1391900_36	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1391900_36	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-1391900_36	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-1391900_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1391900_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1391900_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1391900_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1391900_37	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-1391900_37	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-1391900_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1391900_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1391900_46	PHROG	phrog_88	major tail protein	tail
UHGV-1391900_47	PHROG	phrog_2316	NA	unknown function
UHGV-1391900_47	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-1391900_47	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-1391900_47	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-1391900_48	Structural annotation	PF10879	NA	NA
UHGV-1391900_50	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-1391900_50	Pfam	PF07374	NA	DUF1492
UHGV-1391900_50	Structural annotation	PF07374, NF008895	NA	NA
UHGV-1391900_53	Structural annotation	PF11061	NA	NA
UHGV-1391900_57	PHROG	phrog_15198	NA	unknown function
UHGV-1391900_57	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-1391900_58	Structural annotation	PF17399	NA	NA
UHGV-1391900_60	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1391900_60	UniRef90	UniRef90_A0A413UEW6	SAM-dependent methyltransferase	NA
UHGV-1391900_60	eggNOG-mapper	1321779.HMPREF1984_00119	methyltransferase	NA
UHGV-1391900_60	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1391900_60	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1391900_60	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1391900_65	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-1391900_65	UniRef90	UniRef90_UPI001C25836D	dUTPase	NA
UHGV-1391900_65	eggNOG-mapper	86416.Clopa_4786	PFAM dUTPase	NA
UHGV-1391900_65	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-1391900_65	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-1391900_65	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1391900_66	Structural annotation	PF11184	NA	NA
UHGV-1391900_67	PHROG	phrog_774	NA	unknown function
UHGV-1391900_67	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1391900_71	UniRef90	UniRef90_R6T064	NUMOD4 domain-containing protein	NA
UHGV-1391900_71	Structural annotation	PF13392, PF07453	NA	NA
UHGV-1391900_72	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1391900_72	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1391900_72	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-1391900_72	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-1391900_72	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1391900_72	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1391900_72	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1391900_73	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1391900_73	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-1391900_73	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1391900_73	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1391900_73	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1391900_73	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1391900_73	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-1391900_75	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1391900_75	PHROG	phrog_1	integrase	integration and excision
UHGV-1391900_75	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-1391900_75	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-1391900_75	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1391900_75	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1391900_75	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1391900_79	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1391900_79	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1391900_79	UniRef90	UniRef90_A0A413CSI3	XRE family transcriptional regulator	NA
UHGV-1391900_79	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-1391900_79	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1391900_79	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1391900_79	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1391900_80	UniRef90	UniRef90_A0A4R1RC20	Putative heavy-metal-binding protein	NA
UHGV-1391900_80	eggNOG-mapper	517418.Ctha_1419	Putative heavy-metal-binding	NA
UHGV-1391900_80	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-1391900_80	COG	COG0393	NA	NA
UHGV-1391900_81	KOfam	K14059	int; integrase	NA
UHGV-1391900_81	PHROG	phrog_1	integrase	integration and excision
UHGV-1391900_81	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-1391900_81	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-1391900_81	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1391900_81	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1391900_81	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1391900	Yes	47,530 bps	32.97%	99.90%	0.9761
UHGV-1485958	No	25,388 bps	34.31%	56.52%	0.9802
UHGV-1380010	No	23,486 bps	33.55%	52.30%	0.9730
UHGV-1606607	No	22,194 bps	33.93%	49.40%	0.9785
UHGV-1812278	No	15,855 bps	34.42%	35.28%	0.9784
UHGV-1658390	No	14,203 bps	34.18%	31.61%	0.9780
UHGV-0244068	No	12,833 bps	33.09%	28.56%	0.9763
UHGV-1570999	No	12,075 bps	33.87%	26.87%	0.9749
UHGV-1556374	No	11,263 bps	33.21%	25.06%	0.9706