vOTU-061179

Overview

No. of genomes 22

Genome length 16,881 bps

Completeness 93.97% (high-quality)

Host Bifidobacterium longum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-061179
Number of genomes	22
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00015 › vSUBFAM-00065 › vGENUS-00031 › vSUBGEN-00069 › vOTU-061179
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium › Bifidobacterium longum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0296295
BioSample	SAMN02044692
Genome length	16,881 bps
CheckV completeness	93.97% (high-quality)
CheckV contamination	0.00%
CDS count	20
CDS density	92.89%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0296295_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0296295_3	PHROG	phrog_19265	NA	unknown function
UHGV-0296295_3	UniRef90	UniRef90_UPI00144A2F72	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0296295_3	eggNOG-mapper	566552.BIFCAT_00299	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0296295_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0296295_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0296295_3	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0296295_4	PHROG	phrog_199	holin	lysis
UHGV-0296295_4	UniRef90	UniRef90_U6S4E3	Toxin secretion/phage lysis holin	NA
UHGV-0296295_4	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0296295_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0296295_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0296295_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0296295_5	PHROG	phrog_2150	terminase	head and packaging
UHGV-0296295_5	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-0296295_5	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0296295_5	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0296295_5	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0296295_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0296295_6	Structural annotation	TIGR02219	NA	NA
UHGV-0296295_7	Structural annotation	PF08931	NA	NA
UHGV-0296295_9	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0296295_9	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0296295_10	PHROG	phrog_2038	upper collar connector	connector
UHGV-0296295_10	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0296295_10	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0296295_10	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0296295_10	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0296295_11	PHROG	phrog_2248	tail protein	tail
UHGV-0296295_11	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-0296295_11	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0296295_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0296295_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0296295_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0296295_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0296295_12	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0296295_12	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0296295_12	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0296295_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0296295_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0296295_14	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-0296295_14	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0296295_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0296295_14	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0296295_15	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-0296295_16	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0296295_16	eggNOG-mapper	513550.B6RT34_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0296295_16	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0296295_16	Structural annotation	PF17427	NA	NA
UHGV-0296295_17	Structural annotation	PF17548, MF_00273	NA	NA
UHGV-0296295_19	Structural annotation	PF11680	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0296295	Yes	16,881 bps	53.30%	93.97%	0.9814
UHGV-1284181	No	16,649 bps	53.55%	99.90%	0.9815
UHGV-1281935	No	16,620 bps	53.53%	99.90%	0.9816
UHGV-1302752	No	16,859 bps	53.36%	93.84%	0.9815
UHGV-1286375	No	16,846 bps	53.31%	93.77%	0.9812
UHGV-1269748	No	16,828 bps	53.36%	93.67%	0.9815
UHGV-1282255	No	16,759 bps	53.37%	93.29%	0.9812
UHGV-1297949	No	16,703 bps	53.48%	92.98%	0.9816
UHGV-1282137	No	16,646 bps	53.15%	92.66%	0.9817
UHGV-1283323	No	16,539 bps	53.64%	92.06%	0.9820
UHGV-1284877	No	16,539 bps	53.65%	92.06%	0.9815
UHGV-1324135	No	16,539 bps	53.64%	92.06%	0.9820
UHGV-1278123	No	16,538 bps	53.63%	92.06%	0.9818
UHGV-1273550	No	16,510 bps	53.60%	91.90%	0.9816
UHGV-1286433	No	16,510 bps	53.62%	91.90%	0.9816
UHGV-1286568	No	16,510 bps	53.60%	91.90%	0.9815
UHGV-1295039	No	16,510 bps	53.60%	91.90%	0.9815
UHGV-1277636	No	16,125 bps	53.58%	89.76%	0.9816
UHGV-1224609	No	15,750 bps	53.60%	87.67%	0.9818
UHGV-1321423	No	15,156 bps	53.43%	84.36%	0.9811
UHGV-1187464	No	14,387 bps	53.59%	80.08%	0.9822
UHGV-1309723	No	10,714 bps	54.36%	59.64%	0.9810