vOTU-061421

Overview

vOTU representative UHGV-1532074

No. of genomes 2

Genome length 32,386 bps

Completeness 99.81% (high-quality)

Host Collinsella

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-061421
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-00148 › vGENUS-00191 › vSUBGEN-00319 › vOTU-061421
Host taxonomy	Bacteria › Actinobacteriota › Coriobacteriia › Coriobacteriales › Coriobacteriaceae › Collinsella
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1532074
BioSample	SAMN05414972
Genome length	32,386 bps
CheckV completeness	99.81% (high-quality)
CheckV contamination	0.00%
CDS count	50
CDS density	92.07%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1532074_2	KOfam	K07273	acm; lysozyme	NA
UHGV-1532074_2	PHROG	phrog_291	endolysin	lysis
UHGV-1532074_2	UniRef90	UniRef90_A0A1Y4GDT9	LysM domain-containing protein	NA
UHGV-1532074_2	eggNOG-mapper	445975.COLSTE_02142	CW_7 repeat	NA
UHGV-1532074_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1532074_2	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1532074_2	COG	COG1388	LysM repeat	NA
UHGV-1532074_2	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-1532074_3	UniRef90	UniRef90_A0A414EUJ7	Peptidase_C39_2 domain-containing protein	NA
UHGV-1532074_3	eggNOG-mapper	525282.HMPREF0391_10823	Papain-like cysteine protease AvrRpt2	NA
UHGV-1532074_3	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1532074_3	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-1532074_3	Structural annotation	PF03412, NF033920, COG3271	NA	NA
UHGV-1532074_4	PHROG	phrog_199	holin	lysis
UHGV-1532074_4	UniRef90	UniRef90_UPI0011067090	phage holin family protein	NA
UHGV-1532074_4	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-1532074_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1532074_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1532074_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1532074_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1532074_5	Structural annotation	NF040910	NA	NA
UHGV-1532074_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1532074_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1532074_7	UniRef90	UniRef90_A0A395ZRX3	Reverse transcriptase domain-containing protein	NA
UHGV-1532074_7	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1532074_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1532074_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1532074_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1532074_8	PHROG	phrog_17147	NA	unknown function
UHGV-1532074_8	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-1532074_8	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-1532074_8	Structural annotation	PF21430	NA	NA
UHGV-1532074_9	PHROG	phrog_19280	NA	unknown function
UHGV-1532074_9	UniRef90	UniRef90_A0A4Q2K310	NA	NA
UHGV-1532074_9	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-1532074_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1532074_9	Structural annotation	PF10651	NA	NA
UHGV-1532074_12	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1532074_12	UniRef90	UniRef90_A0A4Q2K438	Prophage_tail domain-containing protein	NA
UHGV-1532074_12	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-1532074_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1532074_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1532074_12	COG	COG4926	Phage-related protein	NA
UHGV-1532074_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1532074_13	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1532074_13	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-1532074_13	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-1532074_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1532074_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1532074_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1532074_13	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1532074_14	PHROG	phrog_23464	NA	unknown function
UHGV-1532074_14	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-1532074_14	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-1532074_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1532074_14	Structural annotation	COG5280	NA	NA
UHGV-1532074_16	Structural annotation	PF12363	NA	NA
UHGV-1532074_17	PHROG	phrog_88	major tail protein	tail
UHGV-1532074_17	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-1532074_17	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-1532074_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1532074_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1532074_18	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-1532074_18	Structural annotation	PF05657, TIGR04412	NA	NA
UHGV-1532074_19	UniRef90	UniRef90_A0A116MZV3	HK97 gp10 family phage protein	NA
UHGV-1532074_19	eggNOG-mapper	1154860.SAG0136_11460	NA	NA
UHGV-1532074_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1532074_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1532074_20	UniRef90	UniRef90_A0A6N7RLQ4	Phage head-tail adapter protein	NA
UHGV-1532074_20	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-1532074_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1532074_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1532074_21	PHROG	phrog_5223	neck protein	connector
UHGV-1532074_21	UniRef90	UniRef90_A0A414ETY6	DNA-packaging protein	NA
UHGV-1532074_21	eggNOG-mapper	1444310.JANV01000004_gene2679	NA	NA
UHGV-1532074_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1532074_22	UniRef90	UniRef90_A0A4Q2K3E6	Phage major capsid protein	NA
UHGV-1532074_22	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-1532074_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1532074_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1532074_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1532074_23	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-1532074_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1532074_24	KOfam	K06904	NA	NA
UHGV-1532074_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1532074_24	UniRef90	UniRef90_A0A414ETZ5	HK97 family phage prohead protease	NA
UHGV-1532074_24	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-1532074_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1532074_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1532074_24	COG	COG3740	Phage head maturation protease	NA
UHGV-1532074_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1532074_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-1532074_25	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-1532074_25	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-1532074_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1532074_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1532074_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1532074_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1532074_26	UniRef90	UniRef90_A0A374TTV6	Terminase large subunit	NA
UHGV-1532074_26	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-1532074_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1532074_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1532074_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1532074_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1532074_27	PHROG	phrog_1066	NA	unknown function
UHGV-1532074_27	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-1532074_27	Structural annotation	TIGR01558	NA	NA
UHGV-1532074_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1532074_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1532074_28	UniRef90	UniRef90_A0A4Q2K147	HNH endonuclease	NA
UHGV-1532074_28	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-1532074_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1532074_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1532074_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1532074_29	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-1532074_29	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-1532074_30	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1532074_30	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1532074_30	UniRef90	UniRef90_A0A414EU11	dUTP diphosphatase	NA
UHGV-1532074_30	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1532074_30	Pfam	PF00692	dUTPase	dUTPase
UHGV-1532074_30	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1532074_30	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1532074_30	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1532074_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1532074_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1532074_31	UniRef90	UniRef90_A0A414EU69	Single-stranded DNA-binding protein	NA
UHGV-1532074_31	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1532074_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1532074_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1532074_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1532074_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1532074_31	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-1532074_33	UniRef90	UniRef90_A0A414EU10	Integration host factor	NA
UHGV-1532074_33	eggNOG-mapper	1236902.ANAS01000016_gene201	Helix-hairpin-helix DNA-binding motif class 1	NA
UHGV-1532074_33	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-1532074_33	COG	COG0099	Ribosomal protein S13	NA
UHGV-1532074_33	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-1532074_34	KOfam	K14059	int; integrase	NA
UHGV-1532074_34	PHROG	phrog_1	integrase	integration and excision
UHGV-1532074_34	UniRef90	UniRef90_A0A414ETY5	Site-specific integrase	NA
UHGV-1532074_34	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-1532074_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1532074_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1532074_34	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1532074_39	PHROG	phrog_236	nucleotide kinase	other
UHGV-1532074_39	UniRef90	UniRef90_A0A414EU32	NA	NA
UHGV-1532074_39	eggNOG-mapper	889876.E2GLY2_9CAUD	NA	NA
UHGV-1532074_39	Pfam	PF11753	NA	DUF3310
UHGV-1532074_39	Structural annotation	PF11753	NA	NA
UHGV-1532074_40	PHROG	phrog_3205	NA	unknown function
UHGV-1532074_40	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-1532074_40	eggNOG-mapper	1158602.I590_02965	NA	NA
UHGV-1532074_42	PHROG	phrog_24189	NA	unknown function
UHGV-1532074_42	UniRef90	UniRef90_A0A414EU02	NA	NA
UHGV-1532074_42	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-1532074_42	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1532074_42	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-1532074_45	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-1532074_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1532074_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1532074_48	UniRef90	UniRef90_A0A414ETV6	XRE family transcriptional regulator	NA
UHGV-1532074_48	eggNOG-mapper	469609.HMPREF0847_01324	Helix-turn-helix XRE-family like proteins	NA
UHGV-1532074_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1532074_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1532074_48	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1532074_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1532074_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1532074_49	UniRef90	UniRef90_A0A414EUF5	XRE family transcriptional regulator	NA
UHGV-1532074_49	eggNOG-mapper	1410612.JNKO01000002_gene2326	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-1532074_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1532074_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1532074_49	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1532074_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1532074_50	PHROG	phrog_95	integrase	integration and excision
UHGV-1532074_50	UniRef90	UniRef90_UPI0013141176	recombinase family protein	NA
UHGV-1532074_50	eggNOG-mapper	445975.COLSTE_02191	Recombinase zinc beta ribbon domain	NA
UHGV-1532074_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1532074_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1532074_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1532074_50	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1532074	Yes	32,386 bps	55.64%	99.81%	0.9718
UHGV-1536119	No	32,615 bps	55.60%	99.90%	0.9707