vOTU-063989

Overview

vOTU representative UHGV-1342003

No. of genomes 4

Genome length 32,482 bps

Completeness 92.32% (high-quality)

Host Ruminococcus E bromii B

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-063989
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00134 › vGENUS-15996 › vSUBGEN-28372 › vOTU-063989
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Acutalibacteraceae › Ruminococcus E › Ruminococcus E bromii B
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-1342003
BioSample	SAMN00792066
Genome length	32,482 bps
CheckV completeness	92.32% (high-quality)
CheckV contamination	0.00%
CDS count	46
CDS density	91.43%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1342003_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1342003_1	PHROG	phrog_20388	endolysin	lysis
UHGV-1342003_1	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1342003_1	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1342003_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1342003_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1342003_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1342003_1	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-1342003_2	PHROG	phrog_881	holin	lysis
UHGV-1342003_2	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-1342003_2	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1342003_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1342003_2	Structural annotation	PF16938	NA	NA
UHGV-1342003_3	PHROG	phrog_1009	NA	unknown function
UHGV-1342003_3	UniRef90	UniRef90_A0A373XMY3	Branched-chain amino acid ABC transporter permease	NA
UHGV-1342003_3	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-1342003_5	PHROG	phrog_5302	tail protein	tail
UHGV-1342003_5	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-1342003_5	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1342003_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1342003_5	Structural annotation	PF10651, NF040788	NA	NA
UHGV-1342003_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1342003_6	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-1342003_6	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-1342003_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1342003_6	COG	COG1511	NA	NA
UHGV-1342003_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1342003_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1342003_7	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-1342003_7	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1342003_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-1342003_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1342003_8	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-1342003_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1342003_8	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-1342003_8	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-1342003_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1342003_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1342003_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1342003_10	Structural annotation	PF11836	NA	NA
UHGV-1342003_11	PHROG	phrog_88	major tail protein	tail
UHGV-1342003_11	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-1342003_11	eggNOG-mapper	1235790.C805_01798	phage major tail protein, phi13 family	NA
UHGV-1342003_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1342003_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1342003_12	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-1342003_12	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1342003_12	Structural annotation	TIGR01725	NA	NA
UHGV-1342003_13	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1342003_14	PHROG	phrog_19734	NA	unknown function
UHGV-1342003_14	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-1342003_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1342003_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1342003_15	PHROG	phrog_749	NA	unknown function
UHGV-1342003_15	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-1342003_15	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-1342003_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-1342003_16	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-1342003_16	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-1342003_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1342003_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1342003_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1342003_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1342003_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1342003_17	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1342003_17	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1342003_17	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-1342003_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1342003_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1342003_17	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1342003_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-1342003_18	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-1342003_18	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-1342003_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1342003_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1342003_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1342003_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1342003_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1342003_19	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-1342003_19	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-1342003_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1342003_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1342003_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1342003_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1342003_20	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1342003_20	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-1342003_20	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-1342003_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1342003_20	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1342003_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1342003_21	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-1342003_21	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-1342003_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1342003_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1342003_22	PHROG	phrog_31049	NA	unknown function
UHGV-1342003_22	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-1342003_22	Structural annotation	TIGR01636	NA	NA
UHGV-1342003_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1342003_23	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-1342003_23	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1342003_27	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-1342003_27	Structural annotation	PF15597	NA	NA
UHGV-1342003_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1342003_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1342003_28	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-1342003_28	eggNOG-mapper	1292035.H476_0281	Peptidase S24-like	NA
UHGV-1342003_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1342003_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1342003_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1342003_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1342003_30	PHROG	phrog_824	NA	unknown function
UHGV-1342003_30	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-1342003_30	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1342003_30	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1342003_30	Structural annotation	PF08774	NA	NA
UHGV-1342003_31	PHROG	phrog_24518	NA	unknown function
UHGV-1342003_31	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-1342003_33	Structural annotation	PF19678, TIGR02610	NA	NA
UHGV-1342003_35	PHROG	phrog_6058	NA	unknown function
UHGV-1342003_35	Structural annotation	NF033787	NA	NA
UHGV-1342003_36	PHROG	phrog_8684	NA	unknown function
UHGV-1342003_36	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-1342003_36	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-1342003_36	Pfam	PF09643	YopX protein	YopX
UHGV-1342003_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1342003_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1342003_37	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1342003_37	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-1342003_37	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-1342003_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1342003_37	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1342003_37	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-1342003_37	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1342003_39	PHROG	phrog_6058	NA	unknown function
UHGV-1342003_39	Structural annotation	NF033787	NA	NA
UHGV-1342003_40	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-1342003_42	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-1342003_42	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-1342003_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1342003_42	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1342003_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1342003_43	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-1342003_43	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-1342003_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1342003_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1342003_43	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1342003_44	PHROG	phrog_1914	NA	unknown function
UHGV-1342003_44	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1342003_44	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-1342003_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1342003_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1342003_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1342003_45	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1342003_45	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-1342003_45	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-1342003_45	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1342003_45	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1342003_45	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1342003_46	KOfam	K14059	int; integrase	NA
UHGV-1342003_46	PHROG	phrog_1	integrase	integration and excision
UHGV-1342003_46	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-1342003_46	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-1342003_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1342003_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1342003_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1342003	Yes	32,482 bps	39.75%	92.32%	0.9552
UHGV-1485273	No	25,376 bps	40.02%	72.13%	0.9770
UHGV-1462250	No	22,447 bps	39.93%	63.80%	0.9751
UHGV-0194697	No	22,427 bps	39.93%	63.74%	0.9660