vOTU-064007

Overview

vOTU representative UHGV-1532082

No. of genomes 5

Genome length 42,884 bps

Completeness 96.69% (high-quality)

Host Lachnospiraceae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-064007
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 › vSUBFAM-00106 › vGENUS-00431 › vSUBGEN-33133 › vOTU-064007
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1532082
BioSample	SAMEA4545392
Genome length	42,884 bps
CheckV completeness	96.69% (high-quality)
CheckV contamination	0.00%
CDS count	68
CDS density	92.89%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1532082_1	PHROG	phrog_17196	kinase	other
UHGV-1532082_1	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-1532082_3	PHROG	phrog_18190	NA	unknown function
UHGV-1532082_3	UniRef90	UniRef90_C7GBZ4	Peptidase S74 domain-containing protein	NA
UHGV-1532082_3	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-1532082_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1532082_3	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-1532082_4	PHROG	phrog_1194	NA	unknown function
UHGV-1532082_4	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-1532082_4	Pfam	PF20458	NA	DUF6711
UHGV-1532082_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1532082_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1532082_5	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-1532082_5	COG	COG5283	Phage-related tail protein	NA
UHGV-1532082_6	PHROG	phrog_706	NA	unknown function
UHGV-1532082_6	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-1532082_6	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-1532082_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1532082_6	Structural annotation	PF06854	NA	NA
UHGV-1532082_7	PHROG	phrog_11299	NA	unknown function
UHGV-1532082_7	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-1532082_7	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-1532082_7	Pfam	PF20378	NA	DUF6673
UHGV-1532082_7	Structural annotation	PF10666	NA	NA
UHGV-1532082_8	PHROG	phrog_3099	NA	unknown function
UHGV-1532082_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1532082_9	PHROG	phrog_3266	tail completion	connector
UHGV-1532082_9	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-1532082_9	Structural annotation	PF12691	NA	NA
UHGV-1532082_10	PHROG	phrog_3366	NA	unknown function
UHGV-1532082_10	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1532082_10	Pfam	PF20536	NA	DUF6751
UHGV-1532082_10	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1532082_11	PHROG	phrog_774	NA	unknown function
UHGV-1532082_11	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1532082_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1532082_12	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-1532082_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-1532082_13	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-1532082_13	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-1532082_13	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-1532082_13	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1532082_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1532082_14	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-1532082_16	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1532082_16	UniRef90	UniRef90_A0A413YTH5	ORF6N domain-containing protein	NA
UHGV-1532082_16	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-1532082_16	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1532082_16	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1532082_17	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-1532082_18	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1532082_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1532082_18	UniRef90	UniRef90_A0A413YTG4	XRE family transcriptional regulator	NA
UHGV-1532082_18	eggNOG-mapper	857293.CAAU_0976	Helix-turn-helix XRE-family like proteins	NA
UHGV-1532082_18	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1532082_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1532082_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1532082_20	UniRef90	UniRef90_A0A413YTH6	ACB domain-containing protein	NA
UHGV-1532082_21	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-1532082_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1532082_22	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-1532082_22	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-1532082_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1532082_22	COG	COG2369	NA	NA
UHGV-1532082_22	Structural annotation	PF06152	NA	NA
UHGV-1532082_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1532082_23	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-1532082_23	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1532082_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1532082_23	Structural annotation	PF11114	NA	NA
UHGV-1532082_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-1532082_24	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-1532082_24	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-1532082_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1532082_25	PHROG	phrog_1233	NA	unknown function
UHGV-1532082_25	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1532082_25	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-1532082_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1532082_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1532082_26	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-1532082_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1532082_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-1532082_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1532082_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1532082_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1532082_26	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1532082_27	PHROG	phrog_9479	NA	unknown function
UHGV-1532082_27	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-1532082_27	Structural annotation	PF15529	NA	NA
UHGV-1532082_28	PHROG	phrog_8680	NA	unknown function
UHGV-1532082_28	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-1532082_28	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1532082_28	Pfam	PF14386	NA	DUF4417
UHGV-1532082_28	Structural annotation	PF14386	NA	NA
UHGV-1532082_29	UniRef90	UniRef90_A0A3R6LT65	ABC transporter ATP-binding protein	NA
UHGV-1532082_30	UniRef90	UniRef90_C7GC16	NA	NA
UHGV-1532082_30	Pfam	PF20037	NA	DUF6440
UHGV-1532082_30	Structural annotation	PF20037	NA	NA
UHGV-1532082_31	UniRef90	UniRef90_A0A7W3XTE8	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA
UHGV-1532082_33	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-1532082_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1532082_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1532082_34	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1532082_34	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-1532082_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1532082_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1532082_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1532082_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1532082_35	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1532082_35	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-1532082_35	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-1532082_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1532082_35	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-1532082_37	PHROG	phrog_20593	NA	unknown function
UHGV-1532082_39	PHROG	phrog_8684	NA	unknown function
UHGV-1532082_39	UniRef90	UniRef90_C7GC23	YopX domain-containing protein	NA
UHGV-1532082_39	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-1532082_39	Pfam	PF09643	YopX protein	YopX
UHGV-1532082_39	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1532082_40	PHROG	phrog_26165	NA	unknown function
UHGV-1532082_42	PHROG	phrog_38832	NA	unknown function
UHGV-1532082_42	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-1532082_42	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-1532082_43	UniRef90	UniRef90_C7GC26	NA	NA
UHGV-1532082_43	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-1532082_43	Pfam	PF04448	NA	DUF551
UHGV-1532082_44	PHROG	phrog_21026	NA	unknown function
UHGV-1532082_46	PHROG	phrog_37044	NA	unknown function
UHGV-1532082_46	eggNOG-mapper	397290.C810_00402	NA	NA
UHGV-1532082_47	PHROG	phrog_16304	NA	unknown function
UHGV-1532082_47	UniRef90	UniRef90_A0A3R6H2J6	NA	NA
UHGV-1532082_47	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-1532082_47	Pfam	PF19808	NA	DUF6291
UHGV-1532082_47	Structural annotation	PF19808	NA	NA
UHGV-1532082_48	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1532082_48	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1532082_48	UniRef90	UniRef90_A0A415TWS7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1532082_48	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1532082_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1532082_48	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1532082_49	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1532082_49	UniRef90	UniRef90_A0A6N3H967	Bro-N domain-containing protein	NA
UHGV-1532082_49	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-1532082_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1532082_49	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1532082_49	COG	COG3617	Prophage antirepressor	NA
UHGV-1532082_49	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1532082_50	PHROG	phrog_7566	NA	unknown function
UHGV-1532082_50	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-1532082_51	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1532082_51	UniRef90	UniRef90_D4L3P7	NA	NA
UHGV-1532082_51	eggNOG-mapper	1304866.K413DRAFT_3016	NA	NA
UHGV-1532082_51	Pfam	PF12684	NA	DUF3799
UHGV-1532082_51	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1532082_51	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1532082_52	PHROG	phrog_3657	NA	unknown function
UHGV-1532082_52	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-1532082_53	PHROG	phrog_1499	NA	unknown function
UHGV-1532082_53	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-1532082_53	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-1532082_53	PADLOC	AAA_15	NA	NA
UHGV-1532082_53	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1532082_53	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1532082_57	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-1532082_59	PHROG	phrog_4621	NA	unknown function
UHGV-1532082_59	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-1532082_63	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-1532082_63	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-1532082_63	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1532082_64	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1532082_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1532082_64	UniRef90	UniRef90_A0A173S886	Transcriptional repressor DicA	NA
UHGV-1532082_64	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-1532082_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1532082_64	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1532082_64	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1532082_65	PHROG	phrog_87	metallo-protease	other
UHGV-1532082_65	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-1532082_65	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-1532082_65	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1532082_65	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1532082_65	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1532082_66	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1532082_66	UniRef90	UniRef90_A0A349ZUJ4	Ig-like domain-containing protein (Fragment)	NA
UHGV-1532082_66	eggNOG-mapper	1410624.JNKK01000014_gene1631	Bacterial Ig-like domain (group 2)	NA
UHGV-1532082_66	Pfam	PF20578	Atrophied bacterial Ig domain	aBig_2
UHGV-1532082_66	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1532082_66	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-1532082_68	KOfam	K14059	int; integrase	NA
UHGV-1532082_68	PHROG	phrog_1	integrase	integration and excision
UHGV-1532082_68	UniRef90	UniRef90_A0A3R6DEK5	Site-specific integrase	NA
UHGV-1532082_68	eggNOG-mapper	397288.C806_00112	Belongs to the 'phage' integrase family	NA
UHGV-1532082_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1532082_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1532082_68	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1532082	Yes	42,884 bps	41.30%	96.69%	0.9783
UHGV-1529244	No	39,316 bps	40.99%	88.69%	0.9765
UHGV-1462676	No	22,756 bps	41.67%	51.21%	0.9748
UHGV-1673153	No	20,909 bps	41.63%	47.05%	0.9773
UHGV-1826123	No	12,027 bps	40.33%	28.14%	0.9735