vOTU-064429

Overview

vOTU representative UHGV-1402000

No. of genomes 20

Genome length 37,301 bps

Completeness 92.01% (high-quality)

Host Alistipes shahii

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-064429
Number of genomes	20
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00049 › vSUBFAM-02777 › vGENUS-05038 › vSUBGEN-09398 › vOTU-064429
Host taxonomy	Bacteria › Bacteroidota › Bacteroidia › Bacteroidales › Rikenellaceae › Alistipes › Alistipes shahii
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1402000
BioSample	SAMN04126270
Genome length	37,301 bps
CheckV completeness	92.01% (high-quality)
CheckV contamination	0.00%
CDS count	55
CDS density	91.17%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1402000_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1402000_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1402000_1	UniRef90	UniRef90_A0A1Y3VG18	Tyr recombinase domain-containing protein	NA
UHGV-1402000_1	eggNOG-mapper	1121100.JCM6294_508	Phage integrase SAM-like domain	NA
UHGV-1402000_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-1402000_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1402000_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1402000_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1402000_1	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1402000_9	Structural annotation	PF10628	NA	NA
UHGV-1402000_14	eggNOG-mapper	411901.BACCAC_01113	Bacterial dnaA protein helix-turn-helix	NA
UHGV-1402000_15	Pfam	PF20647	NA	DUF6808
UHGV-1402000_15	Structural annotation	PF20647	NA	NA
UHGV-1402000_16	PHROG	phrog_873	endolysin	head and packaging
UHGV-1402000_16	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-1402000_16	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-1402000_17	PHROG	phrog_32423	NA	unknown function
UHGV-1402000_18	Structural annotation	PF10043, NF008028	NA	NA
UHGV-1402000_20	UniRef90	UniRef90_A0A5B3GAI3	LamG domain-containing protein	NA
UHGV-1402000_20	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-1402000_20	Structural annotation	PF00354	NA	NA
UHGV-1402000_21	UniRef90	UniRef90_UPI0011778F49	cell envelope integrity protein TolA	NA
UHGV-1402000_21	Structural annotation	PF14545	NA	NA
UHGV-1402000_22	PHROG	phrog_26822	NA	unknown function
UHGV-1402000_22	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-1402000_22	COG	COG4926	Phage-related protein	NA
UHGV-1402000_23	PHROG	phrog_30639	NA	unknown function
UHGV-1402000_23	eggNOG-mapper	997884.HMPREF1068_00297	NA	NA
UHGV-1402000_23	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-1402000_24	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-1402000_24	UniRef90	UniRef90_UPI001D0764B6	tape measure protein	NA
UHGV-1402000_24	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-1402000_24	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1402000_24	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1402000_24	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1402000_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1402000_25	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-1402000_26	PHROG	phrog_1407	major tail protein	tail
UHGV-1402000_26	UniRef90	UniRef90_UPI001913A485	phage tail tube protein	NA
UHGV-1402000_26	eggNOG-mapper	1268240.ATFI01000007_gene413	Phage tail tube protein	NA
UHGV-1402000_26	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1402000_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1402000_27	UniRef90	UniRef90_UPI001CCBF085	NA	NA
UHGV-1402000_27	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-1402000_27	Structural annotation	PF11367, COG5003	NA	NA
UHGV-1402000_28	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-1402000_28	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-1402000_28	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-1402000_29	UniRef90	UniRef90_A0A496CCT1	Head-tail adaptor protein	NA
UHGV-1402000_29	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-1402000_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1402000_30	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1402000_30	UniRef90	UniRef90_A0A3E5G619	Phage gp6-like head-tail connector protein	NA
UHGV-1402000_30	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-1402000_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1402000_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1402000_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1402000_31	PHROG	phrog_617	major head protein	head and packaging
UHGV-1402000_31	UniRef90	UniRef90_A0A3E5G6Y5	Phage major capsid protein	NA
UHGV-1402000_31	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-1402000_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1402000_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1402000_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1402000_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1402000_32	KOfam	K06904	NA	NA
UHGV-1402000_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1402000_32	UniRef90	UniRef90_E5CGA0	HK97 family phage prohead protease	NA
UHGV-1402000_32	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-1402000_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1402000_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1402000_32	COG	COG3740	Phage head maturation protease	NA
UHGV-1402000_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1402000_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-1402000_33	UniRef90	UniRef90_E2N7Z9	Phage portal protein, HK97 family	NA
UHGV-1402000_33	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-1402000_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1402000_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1402000_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1402000_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1402000_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1402000_34	UniRef90	UniRef90_A0A496C8I2	Terminase large subunit	NA
UHGV-1402000_34	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-1402000_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1402000_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1402000_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1402000_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1402000_35	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1402000_35	UniRef90	UniRef90_A0A412GGR3	Phage terminase small subunit P27 family	NA
UHGV-1402000_35	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-1402000_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1402000_35	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1402000_35	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1402000_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1402000_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1402000_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1402000_36	UniRef90	UniRef90_U6RNE0	HNHc domain-containing protein	NA
UHGV-1402000_36	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-1402000_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1402000_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1402000_40	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1402000_40	COG	COG1444	tRNA(Met) C34 N-acetyltransferase TmcA	NA
UHGV-1402000_45	PHROG	phrog_874	NA	unknown function
UHGV-1402000_45	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1402000_45	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1402000_46	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-1402000_52	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1402000_52	UniRef90	UniRef90_UPI0018749974	radical SAM protein	NA
UHGV-1402000_52	eggNOG-mapper	445970.ALIPUT_01609	radical SAM domain protein	NA
UHGV-1402000_52	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1402000_52	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-1402000_53	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1402000_53	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1402000_53	UniRef90	UniRef90_A0A374A0C9	Cytosine-specific methyltransferase	NA
UHGV-1402000_53	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1402000_53	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1402000_53	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1402000_53	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1402000_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1402000_53	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1402000_54	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1402000_54	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1402000_54	UniRef90	UniRef90_B0MZV1	Methyltransferase	NA
UHGV-1402000_54	eggNOG-mapper	445970.ALIPUT_02676	N-4 methylation of cytosine	NA
UHGV-1402000_54	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1402000_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1402000_54	COG	COG0863	DNA modification methylase	NA
UHGV-1402000_54	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1402000_55	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1402000	Yes	37,301 bps	50.55%	92.01%	0.9752
UHGV-0122147	No	29,348 bps	50.74%	75.34%	0.9749
UHGV-1395586	No	29,521 bps	50.37%	73.19%	0.9754
UHGV-0151050	No	24,636 bps	50.47%	63.13%	0.9775
UHGV-1445559	No	24,636 bps	50.47%	63.13%	0.9775
UHGV-1428688	No	24,397 bps	50.60%	62.47%	0.9775
UHGV-0051067	No	24,150 bps	50.96%	62.02%	0.9786
UHGV-1423866	No	24,150 bps	50.96%	62.02%	0.9786
UHGV-1422704	No	23,099 bps	50.21%	59.23%	0.9753
UHGV-1439457	No	19,947 bps	50.37%	51.09%	0.9810
UHGV-1584433	No	17,992 bps	50.69%	46.14%	0.9788
UHGV-1677487	No	17,737 bps	50.83%	45.50%	0.9788
UHGV-1682297	No	17,728 bps	50.77%	45.45%	0.9750
UHGV-1333325	No	17,720 bps	50.79%	45.45%	0.9780
UHGV-1785110	No	16,699 bps	50.97%	42.81%	0.9775
UHGV-1788134	No	16,689 bps	50.95%	42.78%	0.9767
UHGV-0076953	No	17,771 bps	50.56%	42.46%	0.9773
UHGV-1768107	No	17,259 bps	50.48%	41.24%	0.9797
UHGV-0198015	No	14,810 bps	50.09%	31.32%	0.9476
UHGV-2005873	No	12,001 bps	49.70%	24.28%	0.9782