vOTU-064606

Overview

vOTU representative UHGV-1319956

No. of genomes 2

Genome length 33,848 bps

Completeness 99.12% (high-quality)

Host Ruthenibacterium lactatiformans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-064606
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-05019 › vGENUS-09953 › vSUBGEN-12442 › vOTU-064606
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruthenibacterium › Ruthenibacterium lactatiformans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1319956
BioSample	NA
Genome length	33,848 bps
CheckV completeness	99.12% (high-quality)
CheckV contamination	0.00%
CDS count	54
CDS density	92.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1319956_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1319956_1	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-1319956_4	Structural annotation	PF19157	NA	NA
UHGV-1319956_5	UniRef90	UniRef90_A0A1I3J1T2	NA	NA
UHGV-1319956_5	Pfam	PF04448	NA	DUF551
UHGV-1319956_5	Structural annotation	PF04448, NF041588	NA	NA
UHGV-1319956_6	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-1319956_7	Structural annotation	PF06257, NF011232	NA	NA
UHGV-1319956_8	PHROG	phrog_38832	NA	unknown function
UHGV-1319956_8	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1319956_10	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1319956_10	UniRef90	UniRef90_A0A371AZL8	DNA cytosine methyltransferase	NA
UHGV-1319956_10	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1319956_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1319956_10	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1319956_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1319956_12	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-1319956_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1319956_12	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1319956_13	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-1319956_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1319956_14	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1319956_14	UniRef90	UniRef90_A0A3A6E967	Methyltransferase	NA
UHGV-1319956_14	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1319956_14	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1319956_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1319956_14	COG	COG0863	DNA modification methylase	NA
UHGV-1319956_14	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1319956_16	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1319956_16	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-1319956_16	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1319956_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1319956_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1319956_18	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-1319956_18	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-1319956_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1319956_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1319956_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-1319956_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1319956_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1319956_19	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1319956_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1319956_19	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-1319956_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1319956_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1319956_20	UniRef90	UniRef90_A0A0W7TNC8	Single-stranded DNA-binding protein	NA
UHGV-1319956_20	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-1319956_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1319956_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1319956_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1319956_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1319956_20	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1319956_21	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1319956_21	UniRef90	UniRef90_UPI001967FBF8	HNH endonuclease	NA
UHGV-1319956_21	eggNOG-mapper	459495.SPLC1_S010770	endonuclease activity	NA
UHGV-1319956_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1319956_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1319956_22	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1319956_22	eggNOG-mapper	1118057.CAGX01000020_gene1649	NA	NA
UHGV-1319956_22	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1319956_23	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-1319956_23	Structural annotation	PF09588, TIGR04328, COG5377	NA	NA
UHGV-1319956_24	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1319956_24	UniRef90	UniRef90_UPI001966DA32	ERF family protein	NA
UHGV-1319956_24	eggNOG-mapper	1033743.CAES01000078_gene3732	ERF superfamily	NA
UHGV-1319956_24	Pfam	PF04404	ERF superfamily	ERF
UHGV-1319956_24	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1319956_27	PHROG	phrog_30822	NA	unknown function
UHGV-1319956_27	UniRef90	UniRef90_UPI00164AA766	helix-turn-helix domain-containing protein	NA
UHGV-1319956_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1319956_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1319956_27	Structural annotation	PF01381, PF13613, NF041951, COG1476	NA	NA
UHGV-1319956_28	AcrCatalog	cluster_35670	NA	NA
UHGV-1319956_28	Structural annotation	NF042413	NA	NA
UHGV-1319956_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1319956_30	Structural annotation	PF13463, MF_01909, NF033788, COG1846	NA	NA
UHGV-1319956_32	UniRef90	UniRef90_UPI001CD6A7E5	helix-turn-helix domain-containing protein	NA
UHGV-1319956_32	eggNOG-mapper	718252.FP2_06860	NA	NA
UHGV-1319956_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1319956_32	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1319956_33	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1319956_33	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1319956_33	UniRef90	UniRef90_A0A564U5Z2	LexA repressor	NA
UHGV-1319956_33	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1319956_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1319956_33	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1319956_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1319956_33	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1319956_35	KOfam	K14059	int; integrase	NA
UHGV-1319956_35	PHROG	phrog_1	integrase	integration and excision
UHGV-1319956_35	UniRef90	UniRef90_UPI0018989279	site-specific integrase	NA
UHGV-1319956_35	eggNOG-mapper	936580.HMPREF1516_0752	DNA integration	NA
UHGV-1319956_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1319956_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1319956_35	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1319956_37	PHROG	phrog_1129	holin	lysis
UHGV-1319956_37	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-1319956_37	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1319956_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1319956_37	Structural annotation	PF06946	NA	NA
UHGV-1319956_38	PHROG	phrog_4105	NA	unknown function
UHGV-1319956_38	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-1319956_39	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1319956_39	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-1319956_39	UniRef90	UniRef90_A0A3A6EBG8	M23 family peptidase	NA
UHGV-1319956_39	eggNOG-mapper	1041147.AUFB01000010_gene1454	Membrane proteins related to metalloendopeptidases	NA
UHGV-1319956_39	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1319956_39	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1319956_39	Structural annotation	PF01551, NF040883, COG0739, COG5492	NA	NA
UHGV-1319956_40	PHROG	phrog_16573	NA	unknown function
UHGV-1319956_40	UniRef90	UniRef90_A0A0D8IYB2	BppU_N domain-containing protein	NA
UHGV-1319956_40	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-1319956_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1319956_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1319956_41	UniRef90	UniRef90_A0A0D8IVK1	Prophage_tail domain-containing protein	NA
UHGV-1319956_41	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1319956_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1319956_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1319956_41	COG	COG4926	Phage-related protein	NA
UHGV-1319956_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1319956_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1319956_42	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-1319956_42	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-1319956_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1319956_43	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1319956_43	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-1319956_43	eggNOG-mapper	1140001.I571_01843	phage tail tape measure protein	NA
UHGV-1319956_43	COG	COG5412	Phage-related protein	NA
UHGV-1319956_43	Structural annotation	PF20155, COG5280	NA	NA
UHGV-1319956_45	PHROG	phrog_88	major tail protein	tail
UHGV-1319956_45	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-1319956_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1319956_45	COG	COG5492	NA	NA
UHGV-1319956_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1319956_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1319956_46	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-1319956_46	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-1319956_46	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1319956_46	Structural annotation	TIGR01725	NA	NA
UHGV-1319956_47	PHROG	phrog_78	tail terminator	connector
UHGV-1319956_47	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-1319956_47	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1319956_48	PHROG	phrog_19734	NA	unknown function
UHGV-1319956_48	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-1319956_48	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-1319956_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1319956_49	PHROG	phrog_2550	NA	unknown function
UHGV-1319956_49	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-1319956_49	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-1319956_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1319956_50	PHROG	phrog_10	major head protein	head and packaging
UHGV-1319956_50	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-1319956_50	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-1319956_50	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1319956_50	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1319956_50	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1319956_50	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1319956_51	KOfam	K06904	NA	NA
UHGV-1319956_51	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1319956_51	UniRef90	UniRef90_A0A0D8IYC2	HK97 family phage prohead protease	NA
UHGV-1319956_51	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-1319956_51	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1319956_51	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1319956_51	COG	COG3740	Phage head maturation protease	NA
UHGV-1319956_51	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1319956_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-1319956_52	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-1319956_52	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-1319956_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1319956_52	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1319956_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1319956_52	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1319956_53	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1319956_53	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-1319956_53	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-1319956_53	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1319956_53	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1319956_53	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1319956_53	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1319956_54	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1319956_54	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-1319956_54	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1319956_54	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1319956_54	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1319956	Yes	33,848 bps	46.14%	99.12%	0.9792
UHGV-0384353	No	15,107 bps	44.46%	44.37%	0.9817