vOTU-064681

Overview

No. of genomes 3

Genome length 41,453 bps

Completeness 99.90% (high-quality)

Host CAG-103

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-064681
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00581 › vGENUS-00476 › vSUBGEN-04710 › vOTU-064681
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-103
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0052506
BioSample	NA
Genome length	41,453 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	44
CDS density	91.56%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0052506_2	KOfam	K14059	int; integrase	NA
UHGV-0052506_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0052506_2	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0052506_2	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0052506_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0052506_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0052506_2	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0052506_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0052506_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0052506_4	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0052506_4	eggNOG-mapper	928210.CALU01000047_gene122	Helix-turn-helix domain	NA
UHGV-0052506_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0052506_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0052506_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0052506_5	UniRef90	UniRef90_UPI001D0E690A	helix-turn-helix domain-containing protein	NA
UHGV-0052506_5	eggNOG-mapper	1321782.HMPREF1986_00318	NA	NA
UHGV-0052506_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0052506_6	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0052506_6	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0052506_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0052506_10	UniRef90	UniRef90_A0A1Y4L975	YqaJ domain-containing protein	NA
UHGV-0052506_10	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0052506_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0052506_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0052506_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0052506_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0052506_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0052506_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0052506_12	UniRef90	UniRef90_A0A7X7Z0P1	Recombinase RecT	NA
UHGV-0052506_12	eggNOG-mapper	1591073.A0A0B5D0I3_9CAUD	DNA metabolic process	NA
UHGV-0052506_12	Pfam	PF03837	RecT family	RecT
UHGV-0052506_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0052506_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0052506_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0052506_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0052506_13	UniRef90	UniRef90_A0A1Y4M5T6	Single-stranded DNA-binding protein	NA
UHGV-0052506_13	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0052506_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0052506_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0052506_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0052506_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0052506_13	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0052506_14	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0052506_14	UniRef90	UniRef90_A0A1I7FTR4	DnaD and phage-associated domain-containing protein	NA
UHGV-0052506_14	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-0052506_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0052506_17	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0052506_17	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-0052506_17	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0052506_17	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0052506_17	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0052506_17	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0052506_19	PHROG	phrog_38832	NA	unknown function
UHGV-0052506_19	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0052506_19	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0052506_20	PHROG	phrog_3136	NA	unknown function
UHGV-0052506_20	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0052506_20	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0052506_20	Pfam	PF04266	ASCH domain	ASCH
UHGV-0052506_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0052506_20	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0052506_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0052506_22	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0052506_22	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0052506_22	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0052506_23	PHROG	phrog_3392	NA	unknown function
UHGV-0052506_23	UniRef90	UniRef90_A8AT45	Gp21	NA
UHGV-0052506_23	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0052506_26	PHROG	phrog_474	phosphofructokinase	other
UHGV-0052506_26	UniRef90	UniRef90_G9RWI8	NA	NA
UHGV-0052506_26	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0052506_26	Pfam	PF19905	NA	DUF6378
UHGV-0052506_26	Structural annotation	PF19905	NA	NA
UHGV-0052506_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0052506_27	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0052506_27	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0052506_27	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0052506_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0052506_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0052506_28	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0052506_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0052506_29	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0052506_29	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0052506_29	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0052506_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0052506_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0052506_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0052506_30	PHROG	phrog_156	portal protein	head and packaging
UHGV-0052506_30	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0052506_30	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0052506_31	KOfam	K07584	NA	NA
UHGV-0052506_31	PHROG	phrog_4478	peptidase	other
UHGV-0052506_31	UniRef90	UniRef90_UPI001A8F44BB	ribosomal-processing cysteine protease Prp	NA
UHGV-0052506_31	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-0052506_31	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0052506_31	COG	COG2868	NA	NA
UHGV-0052506_31	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0052506_32	PHROG	phrog_13908	NA	unknown function
UHGV-0052506_32	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0052506_33	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0052506_33	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0052506_33	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0052506_33	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0052506_33	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0052506_34	PHROG	phrog_15239	NA	unknown function
UHGV-0052506_35	PHROG	phrog_12105	NA	unknown function
UHGV-0052506_35	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0052506_36	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0052506_36	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0052506_36	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0052506_37	PHROG	phrog_24267	NA	unknown function
UHGV-0052506_37	UniRef90	UniRef90_A0A2H4JF11	Putative structural protein	NA
UHGV-0052506_37	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0052506_38	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0052506_39	PHROG	phrog_22978	NA	unknown function
UHGV-0052506_39	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0052506_39	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0052506_39	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0052506_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0052506_41	PHROG	phrog_1794	amidase	lysis
UHGV-0052506_41	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0052506_41	eggNOG-mapper	1235800.C819_03946	Ami_2	NA
UHGV-0052506_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0052506_41	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0052506_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0052506_41	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0052506_42	PHROG	phrog_1863	NA	unknown function
UHGV-0052506_42	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0052506_42	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0052506_43	PHROG	phrog_1129	holin	lysis
UHGV-0052506_43	UniRef90	UniRef90_A0A8J6J3M3	Phage holin family protein	NA
UHGV-0052506_43	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0052506_43	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0052506_43	Structural annotation	PF06946	NA	NA
UHGV-0052506_44	UniRef90	UniRef90_UPI001C020192	Ig-like domain-containing protein	NA
UHGV-0052506_44	eggNOG-mapper	411462.DORLON_01626	Protein conserved in bacteria	NA
UHGV-0052506_44	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0052506	Yes	41,453 bps	59.08%	99.90%	0.9811
UHGV-1460066	No	41,453 bps	59.08%	99.90%	0.9811
UHGV-1666458	No	13,955 bps	60.91%	33.67%	0.9829