vOTU-067412

Overview

vOTU representative UHGV-0019660

No. of genomes 2

Genome length 34,760 bps

Completeness 99.90% (high-quality)

Host Gemmiger

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-067412
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-00313 › vGENUS-00344 › vSUBGEN-00300 › vOTU-067412
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019660
BioSample	SAMEA4765986
Genome length	34,760 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	46
CDS density	91.28%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019660_1	PHROG	phrog_199	holin	lysis
UHGV-0019660_1	UniRef90	UniRef90_UPI001C0198F4	phage holin family protein	NA
UHGV-0019660_1	eggNOG-mapper	411471.SUBVAR_05868	toxin secretion phage lysis holin	NA
UHGV-0019660_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0019660_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0019660_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0019660_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0019660_2	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0019660_2	PHROG	phrog_16615	peptidase	other
UHGV-0019660_2	UniRef90	UniRef90_UPI001C02DE01	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0019660_2	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0019660_2	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0019660_2	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0019660_2	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0019660_4	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0019660_4	UniRef90	UniRef90_UPI0012E0BB7D	phage tail assembly chaperone	NA
UHGV-0019660_4	eggNOG-mapper	643562.Daes_0337	NA	NA
UHGV-0019660_4	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0019660_4	Structural annotation	PF16778	NA	NA
UHGV-0019660_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0019660_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0019660_5	UniRef90	UniRef90_A0A329TTF1	Reverse transcriptase domain-containing protein	NA
UHGV-0019660_5	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0019660_5	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0019660_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0019660_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0019660_5	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0019660_6	PHROG	phrog_5302	tail protein	tail
UHGV-0019660_6	UniRef90	UniRef90_A0A1F8V1G3	BppU_N domain-containing protein	NA
UHGV-0019660_6	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0019660_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0019660_7	Structural annotation	PF16407	NA	NA
UHGV-0019660_8	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0019660_9	PHROG	phrog_26795	NA	unknown function
UHGV-0019660_9	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0019660_9	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0019660_10	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0019660_10	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-0019660_10	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0019660_11	PHROG	phrog_33680	NA	unknown function
UHGV-0019660_11	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0019660_11	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0019660_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0019660_11	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0019660_12	Structural annotation	PF12363	NA	NA
UHGV-0019660_13	PHROG	phrog_88	major tail protein	tail
UHGV-0019660_13	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-0019660_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0019660_15	UniRef90	UniRef90_UPI000684DFDC	HK97 gp10 family phage protein	NA
UHGV-0019660_15	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0019660_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0019660_15	Structural annotation	TIGR01725	NA	NA
UHGV-0019660_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0019660_16	UniRef90	UniRef90_UPI00195B41A2	phage head closure protein	NA
UHGV-0019660_16	eggNOG-mapper	411470.RUMGNA_02070	NA	NA
UHGV-0019660_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0019660_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0019660_17	PHROG	phrog_5223	neck protein	connector
UHGV-0019660_17	UniRef90	UniRef90_UPI00195CBB4A	DNA-packaging protein	NA
UHGV-0019660_17	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0019660_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0019660_18	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0019660_18	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0019660_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0019660_18	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0019660_19	KOfam	K06904	NA	NA
UHGV-0019660_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0019660_19	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-0019660_19	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-0019660_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0019660_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0019660_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0019660_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0019660_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0019660_20	UniRef90	UniRef90_UPI00195C5E58	phage portal protein	NA
UHGV-0019660_20	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-0019660_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0019660_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0019660_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0019660_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0019660_21	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-0019660_21	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0019660_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0019660_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0019660_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0019660_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0019660_22	PHROG	phrog_1066	NA	unknown function
UHGV-0019660_22	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0019660_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0019660_24	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0019660_24	UniRef90	UniRef90_A0A658JTJ0	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0019660_24	eggNOG-mapper	33035.JPJF01000090_gene99	HicB family	NA
UHGV-0019660_24	Pfam	PF05534	HicB family	HicB
UHGV-0019660_24	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0019660_26	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-0019660_26	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0019660_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0019660_28	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0019660_28	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0019660_28	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0019660_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0019660_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0019660_28	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0019660_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0019660_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0019660_29	UniRef90	UniRef90_A0A1Q6T3I8	AAA_31 domain-containing protein	NA
UHGV-0019660_29	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0019660_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-0019660_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0019660_29	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0019660_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0019660_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0019660_30	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-0019660_30	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0019660_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0019660_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0019660_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-0019660_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0019660_31	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0019660_31	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0019660_31	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0019660_31	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0019660_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019660_31	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0019660_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0019660_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019660_32	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-0019660_32	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0019660_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0019660_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0019660_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0019660_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0019660_32	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0019660_33	PHROG	phrog_1029	NA	unknown function
UHGV-0019660_33	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0019660_33	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0019660_34	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0019660_34	UniRef90	UniRef90_A0A2Z3KP46	Replication terminator protein	NA
UHGV-0019660_34	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0019660_36	PHROG	phrog_7566	NA	unknown function
UHGV-0019660_36	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0019660_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0019660_37	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0019660_37	Pfam	PF05772	NinB protein	NinB
UHGV-0019660_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0019660_38	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0019660_39	PHROG	phrog_10280	NA	unknown function
UHGV-0019660_39	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-0019660_42	eggNOG-mapper	517418.Ctha_0322	NA	NA
UHGV-0019660_42	Structural annotation	PF18186, NF033632	NA	NA
UHGV-0019660_43	UniRef90	UniRef90_A0A2J4JRR6	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0019660_43	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0019660_43	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0019660_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0019660_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0019660_44	UniRef90	UniRef90_A0A6N8H052	Helix-turn-helix domain-containing protein	NA
UHGV-0019660_44	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0019660_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019660_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0019660_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0019660_44	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0019660_46	KOfam	K14059	int; integrase	NA
UHGV-0019660_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0019660_46	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-0019660_46	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0019660_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019660_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0019660_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0019660	Yes	34,760 bps	57.75%	99.90%	0.9799
UHGV-1727609	No	14,829 bps	57.77%	45.05%	0.9785