vOTU-071327

Overview

vOTU representative UHGV-2208380

No. of genomes 2

Genome length 33,623 bps

Completeness 90.34% (high-quality)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-071327
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-08385 › vGENUS-23449 › vSUBGEN-46065 › vOTU-071327
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-2208380
BioSample	SAMN07211127
Genome length	33,623 bps
CheckV completeness	90.34% (high-quality)
CheckV contamination	0.00%
CDS count	57
CDS density	95.24%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2208380_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2208380_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2208380_1	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-2208380_1	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-2208380_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2208380_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2208380_2	PHROG	phrog_21498	NA	unknown function
UHGV-2208380_2	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-2208380_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2208380_2	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-2208380_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2208380_3	UniRef90	UniRef90_A0A6A8VJ07	NA	NA
UHGV-2208380_3	eggNOG-mapper	445972.ANACOL_00233	NA	NA
UHGV-2208380_3	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2208380_3	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2208380_5	PHROG	phrog_25732	NA	unknown function
UHGV-2208380_8	PHROG	phrog_10714	NA	unknown function
UHGV-2208380_8	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-2208380_8	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-2208380_9	UniRef90	UniRef90_U2R3A7	NA	NA
UHGV-2208380_9	Pfam	PF04448	NA	DUF551
UHGV-2208380_10	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2208380_10	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-2208380_10	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2208380_11	UniRef90	UniRef90_U2R3A7	NA	NA
UHGV-2208380_11	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2208380_11	Pfam	PF04448	NA	DUF551
UHGV-2208380_12	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-2208380_12	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-2208380_13	PHROG	phrog_10714	NA	unknown function
UHGV-2208380_15	UniRef90	UniRef90_UPI001D073C08	Lar family restriction alleviation protein	NA
UHGV-2208380_15	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-2208380_15	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2208380_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2208380_16	PHROG	phrog_363	DNA methyltransferase	other
UHGV-2208380_16	UniRef90	UniRef90_A0A1C6D624	Cytosine-specific methyltransferase	NA
UHGV-2208380_16	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-2208380_16	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2208380_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2208380_16	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2208380_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2208380_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2208380_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2208380_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2208380_19	UniRef90	UniRef90_A0A6N8IJL7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2208380_19	eggNOG-mapper	945021.TEH_08430	Endodeoxyribonuclease RusA	NA
UHGV-2208380_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2208380_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2208380_20	Pfam	PF19808	NA	DUF6291
UHGV-2208380_20	Structural annotation	PF19808	NA	NA
UHGV-2208380_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2208380_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2208380_21	UniRef90	UniRef90_A0A1Y4M5T6	Single-stranded DNA-binding protein	NA
UHGV-2208380_21	eggNOG-mapper	877414.ATWA01000008_gene232	Single-strand binding protein family	NA
UHGV-2208380_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2208380_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2208380_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2208380_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2208380_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2208380_22	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2208380_22	UniRef90	UniRef90_A0A3D0LZU3	HNH domain-containing protein	NA
UHGV-2208380_22	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-2208380_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2208380_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2208380_23	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-2208380_23	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-2208380_23	Structural annotation	PF05772	NA	NA
UHGV-2208380_24	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2208380_24	UniRef90	UniRef90_UPI000691FB66	NA	NA
UHGV-2208380_24	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-2208380_24	Pfam	PF06378	NA	DUF1071
UHGV-2208380_24	Structural annotation	PF06378, COG4712	NA	NA
UHGV-2208380_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2208380_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2208380_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2208380_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2208380_28	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-2208380_28	PHROG	phrog_923	NA	unknown function
UHGV-2208380_28	eggNOG-mapper	1235799.C818_02570	Pentapeptide repeats (9 copies)	NA
UHGV-2208380_28	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2208380_28	Pfam	PF19062	NA	DUF5758
UHGV-2208380_28	COG	COG1357	NA	NA
UHGV-2208380_28	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-2208380_31	UniRef90	UniRef90_A0A3C1XB18	NA	NA
UHGV-2208380_31	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-2208380_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2208380_31	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2208380_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2208380_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2208380_32	UniRef90	UniRef90_A0A3A6E835	XRE family transcriptional regulator	NA
UHGV-2208380_32	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-2208380_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2208380_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2208380_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2208380_32	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2208380_33	eggNOG-mapper	1121924.ATWH01000011_gene257	TM2 domain	NA
UHGV-2208380_33	COG	COG2314	NA	NA
UHGV-2208380_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2208380_34	PHROG	phrog_95	integrase	integration and excision
UHGV-2208380_34	UniRef90	UniRef90_A0A1C6HT72	Resolvase, N terminal domain	NA
UHGV-2208380_34	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2208380_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2208380_34	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2208380_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2208380_34	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2208380_35	UniRef90	UniRef90_UPI00189A2D58	helix-turn-helix domain-containing protein	NA
UHGV-2208380_35	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-2208380_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2208380_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2208380_36	UniRef90	UniRef90_A0A7K3I4P2	ParB N-terminal domain-containing protein	NA
UHGV-2208380_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2208380_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2208380_37	PHROG	phrog_435	endolysin	lysis
UHGV-2208380_37	UniRef90	UniRef90_A0A3D2AA77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2208380_37	eggNOG-mapper	66692.ABC2815	Ami_3	NA
UHGV-2208380_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2208380_37	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-2208380_37	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2208380_37	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2208380_37	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-2208380_38	PHROG	phrog_881	holin	lysis
UHGV-2208380_38	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-2208380_38	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-2208380_38	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2208380_38	Structural annotation	PF16938	NA	NA
UHGV-2208380_39	PHROG	phrog_937	hemolysin	other
UHGV-2208380_39	eggNOG-mapper	478749.BRYFOR_07639	NA	NA
UHGV-2208380_40	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-2208380_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2208380_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2208380_41	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-2208380_41	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2208380_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2208380_41	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2208380_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2208380_41	COG	COG4926	Phage-related protein	NA
UHGV-2208380_41	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-2208380_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2208380_42	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-2208380_42	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-2208380_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2208380_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-2208380_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2208380_43	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2208380_43	PHROG	phrog_23464	NA	unknown function
UHGV-2208380_43	UniRef90	UniRef90_UPI00189782F4	phage tail protein	NA
UHGV-2208380_43	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-2208380_43	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2208380_43	COG	COG5283	Phage-related tail protein	NA
UHGV-2208380_45	PHROG	phrog_88	major tail protein	tail
UHGV-2208380_45	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-2208380_45	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-2208380_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2208380_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2208380_46	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-2208380_46	Structural annotation	TIGR01725	NA	NA
UHGV-2208380_47	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-2208380_47	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2208380_48	PHROG	phrog_19734	NA	unknown function
UHGV-2208380_48	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-2208380_48	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-2208380_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2208380_49	PHROG	phrog_749	NA	unknown function
UHGV-2208380_49	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-2208380_49	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-2208380_50	PHROG	phrog_10	major head protein	head and packaging
UHGV-2208380_50	UniRef90	UniRef90_A0A328U7P3	Phage major capsid protein	NA
UHGV-2208380_50	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2208380_50	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2208380_50	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2208380_50	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2208380_50	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2208380_50	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2208380_51	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2208380_51	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2208380_51	UniRef90	UniRef90_A0A3B8U126	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2208380_51	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-2208380_51	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2208380_51	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2208380_51	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2208380_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-2208380_52	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-2208380_52	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2208380_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2208380_52	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2208380_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2208380_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2208380_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2208380_55	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-2208380_55	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-2208380_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2208380_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2208380_55	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2208380_56	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2208380_56	UniRef90	UniRef90_A0A1E3C4W5	RNA polymerase subunit sigma-70	NA
UHGV-2208380_56	eggNOG-mapper	202752.JL53_00755	Phage terminase, small subunit	NA
UHGV-2208380_56	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2208380_56	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2208380	Yes	33,623 bps	54.96%	90.34%	0.9783
UHGV-0877736	No	28,252 bps	54.41%	80.05%	0.9773