vOTU-073111

Overview

vOTU representative UHGV-2008931

No. of genomes 6

Genome length 55,622 bps

Completeness 88.32% (medium-quality)

Host Dialister succinatiphilus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-073111
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 › vSUBFAM-01008 › vOTU-073111
Host taxonomy	Bacteria › Firmicutes C › Negativicutes › Veillonellales › Dialisteraceae › Dialister › Dialister succinatiphilus
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2008931
BioSample	SAMEA2580120
Genome length	55,622 bps
CheckV completeness	88.32% (medium-quality)
CheckV contamination	0.00%
CDS count	80
CDS density	91.62%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2008931_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2008931_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2008931_1	UniRef90	UniRef90_C9LP68	Resolvase, N-terminal domain protein	NA
UHGV-2008931_1	eggNOG-mapper	592028.GCWU000321_01347	overlaps another CDS with the same product name	NA
UHGV-2008931_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2008931_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2008931_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2008931_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2008931_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2008931_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2008931_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2008931_3	UniRef90	UniRef90_R7MYM3	LexA repressor family protein	NA
UHGV-2008931_3	eggNOG-mapper	1273103.NM10_06896	Peptidase S24-like	NA
UHGV-2008931_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2008931_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2008931_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2008931_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2008931_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2008931_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2008931_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2008931_4	UniRef90	UniRef90_A0A7J4UDF0	Helix-turn-helix transcriptional regulator	NA
UHGV-2008931_4	eggNOG-mapper	1226322.HMPREF1545_01026	sequence-specific DNA binding	NA
UHGV-2008931_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2008931_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2008931_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2008931_5	PHROG	phrog_14367	NA	unknown function
UHGV-2008931_5	UniRef90	UniRef90_E4L8C9	LysM domain-containing protein	NA
UHGV-2008931_5	Pfam	PF01476	LysM domain	LysM
UHGV-2008931_5	COG	COG1388	LysM repeat	NA
UHGV-2008931_5	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2008931_9	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2008931_9	UniRef90	UniRef90_E4LA68	Siphovirus Gp157	NA
UHGV-2008931_9	eggNOG-mapper	910314.HMPREF9220_0635	Siphovirus Gp157	NA
UHGV-2008931_9	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2008931_9	Structural annotation	PF05565	NA	NA
UHGV-2008931_10	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2008931_10	UniRef90	UniRef90_UPI000985D1CB	ERF family protein	NA
UHGV-2008931_10	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-2008931_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-2008931_10	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2008931_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2008931_11	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-2008931_11	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-2008931_11	Structural annotation	PF05772	NA	NA
UHGV-2008931_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2008931_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2008931_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2008931_12	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2008931_14	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2008931_14	UniRef90	UniRef90_UPI00073EF250	replication initiator protein A	NA
UHGV-2008931_14	eggNOG-mapper	1122173.AXVL01000018_gene445	NA	NA
UHGV-2008931_14	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-2008931_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2008931_15	Structural annotation	PF11417	NA	NA
UHGV-2008931_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2008931_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2008931_18	UniRef90	UniRef90_UPI0011DFAB25	single-stranded DNA-binding protein	NA
UHGV-2008931_18	eggNOG-mapper	931626.Awo_c35500	Single-stranded DNA-binding protein	NA
UHGV-2008931_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2008931_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2008931_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2008931_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2008931_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2008931_19	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-2008931_26	PHROG	phrog_236	nucleotide kinase	other
UHGV-2008931_26	eggNOG-mapper	1236504.HMPREF2132_11120	NA	NA
UHGV-2008931_26	Pfam	PF11753	NA	DUF3310
UHGV-2008931_27	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-2008931_27	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2008931_27	UniRef90	UniRef90_UPI000308CF5E	HU family DNA-binding protein	NA
UHGV-2008931_27	eggNOG-mapper	1356854.N007_13710	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-2008931_27	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-2008931_27	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-2008931_27	Structural annotation	PF00216, MF_00381, TIGR00988, COG0776	NA	NA
UHGV-2008931_29	eggNOG-mapper	1235790.C805_00028	NA	NA
UHGV-2008931_31	PHROG	phrog_16126	NA	unknown function
UHGV-2008931_32	PHROG	phrog_11947	NA	unknown function
UHGV-2008931_33	KOfam	K18962	rnlB; T4 RNA ligase 2 [EC:6.5.1.3]	NA
UHGV-2008931_33	PHROG	phrog_548	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-2008931_33	UniRef90	UniRef90_A0A7C1A4C1	RNA_ligase domain-containing protein	NA
UHGV-2008931_33	eggNOG-mapper	1327971.R9ZYK2_9CAUD	RNA ligase	NA
UHGV-2008931_33	Pfam	PF09414	RNA ligase	RNA_ligase
UHGV-2008931_33	Structural annotation	PF09414, MF_04150, TIGR02307, COG1423	NA	NA
UHGV-2008931_34	UniRef90	UniRef90_A0A134CHV4	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2008931_34	eggNOG-mapper	910314.HMPREF9220_1104	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-2008931_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2008931_34	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-2008931_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-2008931_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-2008931_36	UniRef90	UniRef90_W3Y6P4	dUTP diphosphatase	NA
UHGV-2008931_36	eggNOG-mapper	879309.HMPREF9199_0733	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-2008931_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-2008931_36	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-2008931_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-2008931_36	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-2008931_37	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-2008931_37	Structural annotation	PF08281, TIGR01636, COG2739	NA	NA
UHGV-2008931_38	eggNOG-mapper	1280663.ATVR01000051_gene2822	NA	NA
UHGV-2008931_38	Pfam	PF20063	NA	DUF6462
UHGV-2008931_40	PHROG	phrog_15863	NA	unknown function
UHGV-2008931_40	UniRef90	UniRef90_A0A644WI33	J domain-containing protein	NA
UHGV-2008931_40	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-2008931_40	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-2008931_43	KOfam	K03630	radC; DNA repair protein RadC	NA
UHGV-2008931_43	PHROG	phrog_10276	DNA repair protein	DNA, RNA and nucleotide metabolism
UHGV-2008931_43	UniRef90	UniRef90_H1CZ81	DNA repair protein RadC	NA
UHGV-2008931_43	eggNOG-mapper	742743.HMPREF9453_00669	Belongs to the UPF0758 family	NA
UHGV-2008931_43	Pfam	PF20582	UPF0758 N-terminal	UPF0758_N
UHGV-2008931_43	Pfam	PF04002	RadC-like JAB domain	RadC
UHGV-2008931_43	NCBIFam	NF000642.1	DNA repair protein RadC	NA
UHGV-2008931_43	COG	COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	NA
UHGV-2008931_43	Structural annotation	PF04002, MF_00018, NF000642, COG2003	NA	NA
UHGV-2008931_50	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-2008931_51	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2008931_51	UniRef90	UniRef90_UPI000B4A679C	helix-turn-helix transcriptional regulator	NA
UHGV-2008931_51	eggNOG-mapper	945021.TEH_08580	transposase activity	NA
UHGV-2008931_51	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-2008931_51	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2008931_51	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2008931_51	Structural annotation	PF16677	NA	NA
UHGV-2008931_54	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2008931_54	UniRef90	UniRef90_A0A1E3XGX2	TerL	NA
UHGV-2008931_54	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-2008931_54	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2008931_54	COG	COG1783	Phage terminase large subunit	NA
UHGV-2008931_54	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-2008931_55	PHROG	phrog_1216	portal protein	head and packaging
UHGV-2008931_55	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-2008931_55	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-2008931_55	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2008931_55	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-2008931_57	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-2008931_58	PHROG	phrog_1328	major head protein	head and packaging
UHGV-2008931_58	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-2008931_58	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-2008931_58	Pfam	PF17236	NA	DUF5309
UHGV-2008931_58	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-2008931_60	Structural annotation	PF20387	NA	NA
UHGV-2008931_61	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-2008931_61	Structural annotation	PF20387	NA	NA
UHGV-2008931_62	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-2008931_62	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2008931_62	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-2008931_63	PHROG	phrog_5417	NA	unknown function
UHGV-2008931_63	UniRef90	UniRef90_UPI001F2C8311	phage tail protein	NA
UHGV-2008931_63	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-2008931_63	Structural annotation	PF12571	NA	NA
UHGV-2008931_64	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-2008931_64	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-2008931_64	Structural annotation	NF012201	NA	NA
UHGV-2008931_65	KOfam	K07273	acm; lysozyme	NA
UHGV-2008931_65	PHROG	phrog_291	endolysin	lysis
UHGV-2008931_65	UniRef90	UniRef90_R6AN85	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-2008931_65	eggNOG-mapper	1280706.AUJE01000010_gene684	Glycosyl hydrolase family 25	NA
UHGV-2008931_65	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2008931_65	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2008931_65	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-2008931_66	eggNOG-mapper	568816.Acin_1902	alcohol dehydrogenase	NA
UHGV-2008931_66	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-2008931_67	KOfam	K06871	NA	NA
UHGV-2008931_67	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-2008931_67	UniRef90	UniRef90_UPI001A8F69ED	radical SAM peptide maturase, CXXX-repeat target family	NA
UHGV-2008931_67	eggNOG-mapper	938278.CAJO01000079_gene1166	Radical SAM domain protein	NA
UHGV-2008931_67	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2008931_67	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-2008931_70	KOfam	K06871	NA	NA
UHGV-2008931_70	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-2008931_70	eggNOG-mapper	397288.C806_04387	4Fe-4S single cluster domain	NA
UHGV-2008931_70	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2008931_70	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-2008931_70	Structural annotation	PF04055, MF_00660, TIGR03906, COG0641	NA	NA
UHGV-2008931_72	PHROG	phrog_7032	tail fiber protein	tail
UHGV-2008931_72	eggNOG-mapper	864563.HMPREF9166_0550	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2008931_72	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2008931_73	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-2008931_73	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2008931_74	KOfam	K14059	int; integrase	NA
UHGV-2008931_74	PHROG	phrog_1	integrase	integration and excision
UHGV-2008931_74	UniRef90	UniRef90_UPI000404EDAD	site-specific integrase	NA
UHGV-2008931_74	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-2008931_74	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2008931_74	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2008931_74	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2008931_76	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-2008931_76	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-2008931_77	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-2008931_78	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-2008931_78	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-2008931_78	Structural annotation	PF01079, NF038136	NA	NA
UHGV-2008931_80	PHROG	phrog_5143	NA	unknown function
UHGV-2008931_80	eggNOG-mapper	1191460.F959_01685	acetyltransferase	NA
UHGV-2008931_80	Pfam	PF06737	Transglycosylase-like domain	Transglycosylas
UHGV-2008931_80	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-2008931_80	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2008931	Yes	55,622 bps	45.36%	88.32%	0.9780
UHGV-0186384	No	57,424 bps	45.55%	91.18%	0.9727
UHGV-1463620	No	41,412 bps	44.80%	65.75%	0.9766
UHGV-0069028	No	41,395 bps	44.80%	65.73%	0.9763
UHGV-1620509	No	13,327 bps	47.08%	21.19%	0.9775
UHGV-1827200	No	11,692 bps	45.06%	18.59%	0.9731