vOTU-073484

Overview

vOTU representative UHGV-0819223

No. of genomes 3

Genome length 38,788 bps

Completeness 99.90% (high-quality)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-073484
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-02731 › vGENUS-03514 › vSUBGEN-13566 › vOTU-073484
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0819223
BioSample	NA
Genome length	38,788 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	67
CDS density	93.69%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0819223_1	PHROG	phrog_21498	NA	unknown function
UHGV-0819223_1	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0819223_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0819223_1	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0819223_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0819223_3	UniRef90	UniRef90_UPI001C529453	RNA polymerase subunit sigma-24	NA
UHGV-0819223_3	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0819223_3	Structural annotation	PF02996	NA	NA
UHGV-0819223_4	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0819223_4	UniRef90	UniRef90_A0A6I0VB33	MazG domain-containing protein	NA
UHGV-0819223_4	Structural annotation	PF12643, MF_00374, TIGR03188, COG0140	NA	NA
UHGV-0819223_5	PHROG	phrog_236	nucleotide kinase	other
UHGV-0819223_5	UniRef90	UniRef90_A0A3R6PB58	NA	NA
UHGV-0819223_5	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0819223_5	Pfam	PF11753	NA	DUF3310
UHGV-0819223_6	PHROG	phrog_22292	NA	unknown function
UHGV-0819223_7	PHROG	phrog_24490	NA	unknown function
UHGV-0819223_7	eggNOG-mapper	1392502.JNIO01000008_gene1300	NA	NA
UHGV-0819223_10	PHROG	phrog_5070	NA	unknown function
UHGV-0819223_10	eggNOG-mapper	1205681.CALW02000068_gene557	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0819223_10	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0819223_10	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0819223_11	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0819223_11	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0819223_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0819223_12	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0819223_12	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0819223_12	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0819223_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0819223_12	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0819223_14	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0819223_14	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0819223_16	PHROG	phrog_9804	NA	unknown function
UHGV-0819223_16	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0819223_16	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0819223_16	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0819223_16	Structural annotation	PF11417	NA	NA
UHGV-0819223_17	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0819223_17	UniRef90	UniRef90_UPI0013D3F9A2	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0819223_17	eggNOG-mapper	1462526.BN990_03905	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0819223_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0819223_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0819223_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0819223_17	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG5529	NA	NA
UHGV-0819223_18	PHROG	phrog_37920	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0819223_18	UniRef90	UniRef90_A0A1D3TPV3	Helix-turn-helix domain-containing protein	NA
UHGV-0819223_18	eggNOG-mapper	1235835.C814_02333	NA	NA
UHGV-0819223_18	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0819223_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0819223_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0819223_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0819223_19	UniRef90	UniRef90_A0A3D4YIP0	Single-stranded DNA-binding protein	NA
UHGV-0819223_19	eggNOG-mapper	1161902.HMPREF0378_1713	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0819223_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0819223_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0819223_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0819223_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0819223_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0819223_20	PHROG	phrog_7566	NA	unknown function
UHGV-0819223_20	UniRef90	UniRef90_A0A1I0JPK6	Phosphoenolpyruvate carboxykinase	NA
UHGV-0819223_20	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0819223_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0819223_21	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0819223_21	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0819223_22	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0819223_22	UniRef90	UniRef90_A0A843HP81	ERF family protein	NA
UHGV-0819223_22	eggNOG-mapper	1289595.M1Q0X6_9VIRU	ERF superfamily	NA
UHGV-0819223_22	Pfam	PF04404	ERF superfamily	ERF
UHGV-0819223_22	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0819223_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0819223_23	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0819223_23	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0819223_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0819223_23	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0819223_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0819223_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0819223_29	UniRef90	UniRef90_F8DPU3	Phage antirepressor protein	NA
UHGV-0819223_29	eggNOG-mapper	887325.HMPREF0381_0355	Phage antirepressor protein KilAC domain	NA
UHGV-0819223_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0819223_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0819223_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0819223_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0819223_30	PHROG	phrog_3306	NA	unknown function
UHGV-0819223_30	UniRef90	UniRef90_UPI000CF972A3	NA	NA
UHGV-0819223_30	eggNOG-mapper	500633.CLOHIR_01403	NA	NA
UHGV-0819223_30	AcrCatalog	cluster_5078	NA	NA
UHGV-0819223_30	Pfam	PF19670	NA	DUF6173
UHGV-0819223_30	Structural annotation	PF19670	NA	NA
UHGV-0819223_32	Structural annotation	NF041909	NA	NA
UHGV-0819223_35	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0819223_35	UniRef90	UniRef90_A0A2N5PI67	Transcriptional regulator	NA
UHGV-0819223_35	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0819223_35	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0819223_35	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0819223_35	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0819223_35	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0819223_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0819223_36	Structural annotation	PF21291, NF041951, COG3655	NA	NA
UHGV-0819223_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0819223_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0819223_37	UniRef90	UniRef90_UPI00164C6CD0	XRE family transcriptional regulator	NA
UHGV-0819223_37	eggNOG-mapper	718252.FP2_06870	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0819223_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0819223_37	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0819223_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0819223_37	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0819223_38	PHROG	phrog_3727	NA	unknown function
UHGV-0819223_38	UniRef90	UniRef90_UPI001BE87B45	NA	NA
UHGV-0819223_38	eggNOG-mapper	1196028.ALEF01000043_gene497	NA	NA
UHGV-0819223_38	Structural annotation	PF16781, MF_00791, TIGR03780, COG2967	NA	NA
UHGV-0819223_39	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0819223_39	PHROG	phrog_95	integrase	integration and excision
UHGV-0819223_39	UniRef90	UniRef90_UPI0011DE2A43	recombinase family protein	NA
UHGV-0819223_39	eggNOG-mapper	658655.HMPREF0988_02600	Resolvase, N terminal domain	NA
UHGV-0819223_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0819223_39	Pfam	PF07508	Recombinase	Recombinase
UHGV-0819223_39	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0819223_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0819223_39	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0819223_42	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0819223_42	PHROG	phrog_670	endolysin	lysis
UHGV-0819223_42	UniRef90	UniRef90_UPI001C0FFF93	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0819223_42	eggNOG-mapper	1121335.Clst_0412	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0819223_42	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0819223_42	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0819223_42	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0819223_43	PHROG	phrog_443	holin	lysis
UHGV-0819223_43	UniRef90	UniRef90_R6N967	Conserved domain protein	NA
UHGV-0819223_43	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0819223_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0819223_43	Structural annotation	PF16945	NA	NA
UHGV-0819223_45	Structural annotation	PF07328, NF001949	NA	NA
UHGV-0819223_47	PHROG	phrog_30034	NA	unknown function
UHGV-0819223_47	UniRef90	UniRef90_R6TFQ2	Glycosyl hydrolase family 18 family protein	NA
UHGV-0819223_47	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0819223_48	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0819223_48	eggNOG-mapper	1232449.BAHV02000010_gene2732	NA	NA
UHGV-0819223_48	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0819223_50	PHROG	phrog_18725	NA	unknown function
UHGV-0819223_50	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0819223_51	PHROG	phrog_13879	NA	unknown function
UHGV-0819223_51	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0819223_51	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0819223_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0819223_53	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0819223_53	PHROG	phrog_23464	NA	unknown function
UHGV-0819223_53	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0819223_53	COG	COG5412	Phage-related protein	NA
UHGV-0819223_53	Structural annotation	PF02050	NA	NA
UHGV-0819223_54	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0819223_54	UniRef90	UniRef90_B0MAX6	Phage regulatory protein, Rha family	NA
UHGV-0819223_54	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0819223_54	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0819223_54	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0819223_54	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0819223_54	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0819223_55	Structural annotation	PF11836	NA	NA
UHGV-0819223_56	PHROG	phrog_88	major tail protein	tail
UHGV-0819223_56	UniRef90	UniRef90_A0A1C6CIL7	Phage major tail protein, phi13 family	NA
UHGV-0819223_56	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0819223_56	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0819223_56	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0819223_57	UniRef90	UniRef90_A0A1C6CIQ6	Phage protein, HK97 gp10 family	NA
UHGV-0819223_57	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0819223_57	Structural annotation	TIGR01725	NA	NA
UHGV-0819223_58	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0819223_58	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0819223_59	PHROG	phrog_19734	NA	unknown function
UHGV-0819223_59	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0819223_59	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0819223_59	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0819223_60	PHROG	phrog_749	NA	unknown function
UHGV-0819223_60	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0819223_60	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0819223_62	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0819223_62	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0819223_62	UniRef90	UniRef90_UPI00189F9CC1	head fiber protein	NA
UHGV-0819223_62	eggNOG-mapper	742738.HMPREF9460_02513	NA	NA
UHGV-0819223_62	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0819223_62	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0819223_63	PHROG	phrog_10	major head protein	head and packaging
UHGV-0819223_63	UniRef90	UniRef90_A0A328U7P3	Phage major capsid protein	NA
UHGV-0819223_63	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0819223_63	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0819223_63	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0819223_63	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0819223_63	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0819223_63	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0819223_64	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0819223_64	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0819223_64	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0819223_64	eggNOG-mapper	1403313.AXBR01000002_gene4326	Belongs to the peptidase S14 family	NA
UHGV-0819223_64	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0819223_64	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0819223_64	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0819223_65	PHROG	phrog_12	portal protein	head and packaging
UHGV-0819223_65	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0819223_65	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0819223_65	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0819223_65	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0819223_65	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0819223_65	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0819223_66	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0819223_66	UniRef90	UniRef90_A0A7C7DBW7	Terminase large subunit	NA
UHGV-0819223_66	eggNOG-mapper	349161.Dred_2607	Phage terminase-like protein large subunit	NA
UHGV-0819223_66	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0819223_66	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0819223_66	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0819223_66	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0819223_67	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0819223_67	UniRef90	UniRef90_A0A1H0WCR3	Phage terminase, small subunit	NA
UHGV-0819223_67	eggNOG-mapper	1405.DJ92_861	NA	NA
UHGV-0819223_67	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0819223_67	COG	COG5484	NA	NA
UHGV-0819223_67	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0819223	Yes	38,788 bps	45.94%	99.90%	0.9813
UHGV-0788604	No	38,870 bps	45.98%	99.90%	0.9813
UHGV-1335528	No	38,819 bps	46.08%	99.90%	0.9815