vOTU-073922

Overview

vOTU representative UHGV-1471964

No. of genomes 1

Genome length 40,849 bps

Completeness 99.30% (high-quality)

Host Lachnospira sp900316325

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-073922
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-04875 › vGENUS-09342 › vSUBGEN-10780 › vOTU-073922
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Lachnospira › Lachnospira sp900316325
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1471964
BioSample	SAMN02333995
Genome length	40,849 bps
CheckV completeness	99.30% (high-quality)
CheckV contamination	0.00%
CDS count	62
CDS density	92.90%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1471964_1	PHROG	phrog_27197	NA	unknown function
UHGV-1471964_1	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-1471964_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1471964_1	Structural annotation	NF007410	NA	NA
UHGV-1471964_2	Structural annotation	PF00412	NA	NA
UHGV-1471964_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1471964_5	UniRef90	UniRef90_UPI001439856C	ERF family protein	NA
UHGV-1471964_5	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-1471964_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-1471964_5	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1471964_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1471964_6	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1471964_6	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1471964_7	PHROG	phrog_7566	NA	unknown function
UHGV-1471964_7	UniRef90	UniRef90_A0A3A9F1H7	Phosphoenolpyruvate carboxykinase	NA
UHGV-1471964_7	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-1471964_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1471964_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1471964_8	UniRef90	UniRef90_UPI00156F1EC1	single-stranded DNA-binding protein	NA
UHGV-1471964_8	eggNOG-mapper	500632.CLONEX_04019	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1471964_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1471964_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1471964_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1471964_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1471964_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1471964_9	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1471964_9	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-1471964_9	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-1471964_9	Pfam	PF06356	NA	DUF1064
UHGV-1471964_9	Structural annotation	PF06356	NA	NA
UHGV-1471964_11	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-1471964_12	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-1471964_13	PHROG	phrog_11769	NA	unknown function
UHGV-1471964_13	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-1471964_13	eggNOG-mapper	1178540.BA70_18625	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1471964_13	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1471964_13	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1471964_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1471964_13	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1471964_14	PHROG	phrog_9804	NA	unknown function
UHGV-1471964_14	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-1471964_14	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-1471964_14	AcrCatalog	cluster_137185	NA	NA
UHGV-1471964_14	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1471964_14	Structural annotation	PF11417	NA	NA
UHGV-1471964_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1471964_15	UniRef90	UniRef90_A0A374MZ02	NA	NA
UHGV-1471964_15	eggNOG-mapper	1392501.JIAC01000001_gene1511	sigma factor activity	NA
UHGV-1471964_15	Pfam	PF07374	NA	DUF1492
UHGV-1471964_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1471964_15	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-1471964_17	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1471964_17	eggNOG-mapper	411471.SUBVAR_04675	COG NOG12663 non supervised orthologous group	NA
UHGV-1471964_17	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1471964_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1471964_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1471964_19	UniRef90	UniRef90_UPI001D1288A8	terminase small subunit	NA
UHGV-1471964_19	eggNOG-mapper	1095750.HMPREF9970_1030	Terminase small subunit	NA
UHGV-1471964_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1471964_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1471964_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1471964_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1471964_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1471964_20	UniRef90	UniRef90_UPI001C107040	PBSX family phage terminase large subunit	NA
UHGV-1471964_20	eggNOG-mapper	1235796.C815_00926	phage terminase, large subunit	NA
UHGV-1471964_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1471964_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1471964_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1471964_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1471964_20	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1471964_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1471964_21	PHROG	phrog_18805	NA	unknown function
UHGV-1471964_21	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1471964_21	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1471964_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1471964_22	UniRef90	UniRef90_UPI000E5D0BC3	phage portal protein	NA
UHGV-1471964_22	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1471964_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1471964_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1471964_23	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-1471964_23	UniRef90	UniRef90_UPI00189FDDA6	minor capsid protein	NA
UHGV-1471964_23	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-1471964_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1471964_23	COG	COG2369	NA	NA
UHGV-1471964_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1471964_24	PHROG	phrog_6473	NA	unknown function
UHGV-1471964_24	eggNOG-mapper	619693.HMPREF6745_0724	NA	NA
UHGV-1471964_25	PHROG	phrog_443	holin	lysis
UHGV-1471964_25	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-1471964_25	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-1471964_25	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1471964_25	Structural annotation	PF16945	NA	NA
UHGV-1471964_26	KOfam	K07273	acm; lysozyme	NA
UHGV-1471964_26	PHROG	phrog_291	endolysin	lysis
UHGV-1471964_26	UniRef90	UniRef90_UPI001C026A43	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1471964_26	eggNOG-mapper	1127131.WEISSC39_10855	hydrolase, family 25	NA
UHGV-1471964_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1471964_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1471964_26	Structural annotation	PF01183, NF004283, COG3757	NA	NA
UHGV-1471964_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1471964_27	UniRef90	UniRef90_A0A1C6E8W4	Phage minor structural protein GP20	NA
UHGV-1471964_27	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-1471964_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1471964_27	Structural annotation	PF06810	NA	NA
UHGV-1471964_28	PHROG	phrog_247	major head protein	head and packaging
UHGV-1471964_28	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-1471964_28	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-1471964_28	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1471964_30	PHROG	phrog_1236	head protein	head and packaging
UHGV-1471964_30	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-1471964_30	Structural annotation	PF05135	NA	NA
UHGV-1471964_31	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-1471964_31	UniRef90	UniRef90_UPI0016516CE8	head-tail adaptor protein	NA
UHGV-1471964_31	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-1471964_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1471964_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1471964_32	UniRef90	UniRef90_UPI00189F42E9	HK97 gp10 family phage protein	NA
UHGV-1471964_32	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-1471964_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1471964_33	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-1471964_33	Structural annotation	PF12691	NA	NA
UHGV-1471964_34	PHROG	phrog_885	major tail protein	tail
UHGV-1471964_34	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-1471964_34	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-1471964_35	PHROG	phrog_1021	NA	unknown function
UHGV-1471964_35	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-1471964_37	PHROG	phrog_23464	NA	unknown function
UHGV-1471964_37	UniRef90	UniRef90_A0A8J8MNB7	Phage tail tape measure protein	NA
UHGV-1471964_37	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1471964_37	COG	COG5283	Phage-related tail protein	NA
UHGV-1471964_38	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1471964_38	UniRef90	UniRef90_A0A3D4VTZ8	Phage tail tape measure protein	NA
UHGV-1471964_38	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-1471964_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1471964_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1471964_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1471964_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1471964_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1471964_40	PHROG	phrog_23052	NA	unknown function
UHGV-1471964_40	UniRef90	UniRef90_A0A0D0SC74	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-1471964_40	eggNOG-mapper	946235.CAER01000065_gene2433	NA	NA
UHGV-1471964_40	Structural annotation	PF14879, PF09931, NF033848, NF033147, COG3500	NA	NA
UHGV-1471964_41	eggNOG-mapper	243164.DET1075	NA	NA
UHGV-1471964_41	Pfam	PF00754	F5/8 type C domain	F5_F8_type_C
UHGV-1471964_42	PHROG	phrog_19291	NA	unknown function
UHGV-1471964_42	eggNOG-mapper	1118057.CAGX01000043_gene476	NA	NA
UHGV-1471964_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1471964_44	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-1471964_44	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-1471964_44	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1471964_45	PHROG	phrog_3558	tail protein	tail
UHGV-1471964_45	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-1471964_45	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1471964_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1471964_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1471964_45	COG	COG4926	Phage-related protein	NA
UHGV-1471964_45	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-1471964_46	PHROG	phrog_372	tail protein	tail
UHGV-1471964_46	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-1471964_46	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-1471964_46	Pfam	PF05895	NA	DUF859
UHGV-1471964_46	COG	COG4675	Phage tail collar domain	NA
UHGV-1471964_46	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1471964_47	PHROG	phrog_1863	NA	unknown function
UHGV-1471964_47	eggNOG-mapper	665956.HMPREF1032_02709	NA	NA
UHGV-1471964_51	UniRef90	UniRef90_UPI000315FECE	helix-turn-helix transcriptional regulator	NA
UHGV-1471964_51	eggNOG-mapper	1007096.BAGW01000035_gene1350	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1471964_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1471964_51	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1471964_52	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-1471964_52	PHROG	phrog_37855	NA	unknown function
UHGV-1471964_52	UniRef90	UniRef90_A0A1C6JKJ2	Stage 0 sporulation protein A	NA
UHGV-1471964_52	eggNOG-mapper	1347368.HG964405_gene6038	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-1471964_52	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1471964_52	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-1471964_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1471964_54	PHROG	phrog_95	integrase	integration and excision
UHGV-1471964_54	UniRef90	UniRef90_A0A143XYP5	DNA-invertase hin	NA
UHGV-1471964_54	eggNOG-mapper	883156.HMPREF9282_01201	Resolvase, N terminal domain	NA
UHGV-1471964_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1471964_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-1471964_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1471964_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1471964_54	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1471964_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1471964_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1471964_57	UniRef90	UniRef90_A0A7M3SAN0	DNA-binding phage protein	NA
UHGV-1471964_57	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-1471964_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1471964_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1471964_57	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-1471964_58	UniRef90	UniRef90_U7UMW3	Transcriptional regulator, Fis family	NA
UHGV-1471964_58	eggNOG-mapper	1111454.HMPREF1250_1031	NA	NA
UHGV-1471964_58	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1471964_62	PHROG	phrog_4433	NA	unknown function
UHGV-1471964_62	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-1471964_62	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1471964	Yes	40,849 bps	37.71%	99.30%	0.9773