vOTU-074308

Overview

vOTU representative UHGV-0203473

No. of genomes 1

Genome length 51,094 bps

Completeness 94.65% (high-quality)

Host ERR7738587 bin.157

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-074308
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00226 › vSUBFAM-06363 › vGENUS-15875 › vSUBGEN-28067 › vOTU-074308
Host taxonomy	Bacteria › Bacteroidota › Bacteroidia › Bacteroidales › Paludibacteraceae › RF16 › ERR7738587 bin.157
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0203473
BioSample	SAMN11252253
Genome length	51,094 bps
CheckV completeness	94.65% (high-quality)
CheckV contamination	0.00%
CDS count	79
CDS density	84.16%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0203473_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0203473_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0203473_1	UniRef90	UniRef90_A0A2L2WVS1	Transposase	NA
UHGV-0203473_1	eggNOG-mapper	997884.HMPREF1068_03093	Belongs to the 'phage' integrase family	NA
UHGV-0203473_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0203473_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0203473_1	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0203473_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0203473_3	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0203473_3	UniRef90	UniRef90_A0A7X6NBV7	Methyltransferase	NA
UHGV-0203473_3	eggNOG-mapper	1122243.KB903771_gene1539	DNA methylase	NA
UHGV-0203473_3	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0203473_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0203473_3	COG	COG0863	DNA modification methylase	NA
UHGV-0203473_3	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0203473_6	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0203473_6	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0203473_6	UniRef90	UniRef90_UPI001CDC98C2	dUTP diphosphatase	NA
UHGV-0203473_6	eggNOG-mapper	1187128.I2GUG7_9CAUD	dUTPase	NA
UHGV-0203473_6	Pfam	PF00692	dUTPase	dUTPase
UHGV-0203473_6	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0203473_6	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0203473_8	PHROG	phrog_35741	NA	unknown function
UHGV-0203473_8	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-0203473_11	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0203473_11	UniRef90	UniRef90_A0A3E5ALS7	HNH endonuclease	NA
UHGV-0203473_11	eggNOG-mapper	157924.Q7Y4J8_9CAUD	HNH endonuclease	NA
UHGV-0203473_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0203473_11	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0203473_12	Structural annotation	PF10922	NA	NA
UHGV-0203473_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0203473_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0203473_13	UniRef90	UniRef90_UPI0018984E82	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0203473_13	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0203473_13	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0203473_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0203473_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0203473_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0203473_13	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0203473_14	PHROG	phrog_874	NA	unknown function
UHGV-0203473_14	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0203473_14	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0203473_17	PHROG	phrog_4433	NA	unknown function
UHGV-0203473_17	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0203473_17	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0203473_17	Structural annotation	NF007410	NA	NA
UHGV-0203473_26	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0203473_26	UniRef90	UniRef90_UPI001C5C6CAC	NA	NA
UHGV-0203473_26	eggNOG-mapper	1235803.C825_01337	NA	NA
UHGV-0203473_26	Pfam	PF11325	NA	DUF3127
UHGV-0203473_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0203473_26	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0203473_28	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0203473_28	eggNOG-mapper	869209.Tresu_2711	DnaD domain protein	NA
UHGV-0203473_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0203473_28	Structural annotation	PF05584, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0203473_29	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0203473_29	UniRef90	UniRef90_UPI0019586BB5	YqaJ viral recombinase family protein	NA
UHGV-0203473_29	eggNOG-mapper	292414.TM1040_0783	YqaJ-like viral recombinase domain	NA
UHGV-0203473_29	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0203473_30	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0203473_30	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0203473_30	UniRef90	UniRef90_A0A843ETA6	Recombinase RecT	NA
UHGV-0203473_30	eggNOG-mapper	1121100.JCM6294_519	RecT family	NA
UHGV-0203473_30	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0203473_30	Pfam	PF03837	RecT family	RecT
UHGV-0203473_30	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0203473_30	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0203473_31	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0203473_31	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0203473_31	UniRef90	UniRef90_UPI001F1619B4	recombinase RecT	NA
UHGV-0203473_31	eggNOG-mapper	742725.HMPREF9450_02076	RecT family	NA
UHGV-0203473_31	Pfam	PF03837	RecT family	RecT
UHGV-0203473_31	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0203473_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0203473_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0203473_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0203473_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0203473_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0203473_35	UniRef90	UniRef90_A0A3D1KG68	HTH cro/C1-type domain-containing protein	NA
UHGV-0203473_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0203473_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0203473_46	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0203473_47	PHROG	phrog_29	major head protein	head and packaging
UHGV-0203473_47	UniRef90	UniRef90_A0A5B5VID5	Major capsid protein E	NA
UHGV-0203473_47	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-0203473_47	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0203473_48	Structural annotation	PF20449	NA	NA
UHGV-0203473_53	eggNOG-mapper	742727.HMPREF9447_04837	NA	NA
UHGV-0203473_55	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0203473_61	Structural annotation	PF10628	NA	NA
UHGV-0203473_64	UniRef90	UniRef90_D3IH35	Toxin secretion/phage lysis holin	NA
UHGV-0203473_64	eggNOG-mapper	575615.HMPREF0670_00654	Bacteriophage holin family	NA
UHGV-0203473_64	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0203473_64	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0203473_67	eggNOG-mapper	762968.HMPREF9441_00558	Filamentation induced by cAMP protein fic	NA
UHGV-0203473_67	COG	COG3177	Fic family protein	NA
UHGV-0203473_68	UniRef90	UniRef90_UPI00189A7F81	glycosyl transferase	NA
UHGV-0203473_68	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-0203473_68	Structural annotation	COG3371	NA	NA
UHGV-0203473_69	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0203473_69	PHROG	phrog_822	amidase	lysis
UHGV-0203473_69	UniRef90	UniRef90_R7BJV8	Putative N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0203473_69	eggNOG-mapper	1002367.HMPREF0673_02180	NA	NA
UHGV-0203473_69	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0203473_69	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0203473_69	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0203473_70	PHROG	phrog_1365	NA	unknown function
UHGV-0203473_72	PHROG	phrog_824	NA	unknown function
UHGV-0203473_72	UniRef90	UniRef90_A0A414ZEU3	VRR-NUC domain-containing protein	NA
UHGV-0203473_72	eggNOG-mapper	357276.EL88_12700	VRR_NUC	NA
UHGV-0203473_72	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0203473_72	Structural annotation	PF08774	NA	NA
UHGV-0203473_75	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0203473_75	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0203473_75	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0203473_75	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0203473_75	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0203473_75	Pfam	PF14623	Hint-domain	Vint
UHGV-0203473_75	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0203473_75	COG	COG1783	Phage terminase large subunit	NA
UHGV-0203473_77	PHROG	phrog_64	portal protein	head and packaging
UHGV-0203473_77	UniRef90	UniRef90_UPI00189D88D6	phage portal protein	NA
UHGV-0203473_77	eggNOG-mapper	1268240.ATFI01000008_gene2582	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0203473_77	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0203473_77	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0203473_78	eggNOG-mapper	1236504.HMPREF2132_11265	NA	NA
UHGV-0203473_79	PHROG	phrog_15074	NA	unknown function
UHGV-0203473_79	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-0203473_79	COG	COG4926	Phage-related protein	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0203473	Yes	51,094 bps	45.78%	94.65%	0.9479