vOTU-076311

Overview

vOTU representative UHGV-0204569

No. of genomes 2

Genome length 39,755 bps

Completeness 97.99% (high-quality)

Host Alistipes shahii

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-076311
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00049 › vSUBFAM-02777 › vGENUS-05038 › vSUBGEN-34934 › vOTU-076311
Host taxonomy	Bacteria › Bacteroidota › Bacteroidia › Bacteroidales › Rikenellaceae › Alistipes › Alistipes shahii
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0204569
BioSample	NA
Genome length	39,755 bps
CheckV completeness	97.99% (high-quality)
CheckV contamination	0.00%
CDS count	64
CDS density	89.16%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204569_1	PHROG	phrog_9562	NA	unknown function
UHGV-0204569_1	UniRef90	UniRef90_UPI001D07F68D	pentapeptide repeat-containing protein	NA
UHGV-0204569_1	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0204569_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0204569_1	Pfam	PF19062	NA	DUF5758
UHGV-0204569_1	COG	COG1357	NA	NA
UHGV-0204569_1	Structural annotation	PF19062	NA	NA
UHGV-0204569_7	PHROG	phrog_874	NA	unknown function
UHGV-0204569_7	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0204569_7	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0204569_9	Structural annotation	NF011227	NA	NA
UHGV-0204569_11	PHROG	phrog_8684	NA	unknown function
UHGV-0204569_11	UniRef90	UniRef90_UPI000E4AC8B6	YopX family protein	NA
UHGV-0204569_11	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-0204569_11	Pfam	PF09643	YopX protein	YopX
UHGV-0204569_11	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0204569_11	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0204569_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0204569_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204569_15	UniRef90	UniRef90_U6RNE0	HNHc domain-containing protein	NA
UHGV-0204569_15	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0204569_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0204569_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0204569_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0204569_16	UniRef90	UniRef90_A0A412GGR3	Phage terminase small subunit P27 family	NA
UHGV-0204569_16	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-0204569_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0204569_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0204569_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0204569_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0204569_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0204569_17	UniRef90	UniRef90_A0A496C8I2	Terminase large subunit	NA
UHGV-0204569_17	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-0204569_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0204569_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0204569_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0204569_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0204569_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0204569_18	UniRef90	UniRef90_E2N7Z9	Phage portal protein, HK97 family	NA
UHGV-0204569_18	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-0204569_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0204569_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0204569_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0204569_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0204569_19	KOfam	K06904	NA	NA
UHGV-0204569_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0204569_19	UniRef90	UniRef90_E5CGA0	HK97 family phage prohead protease	NA
UHGV-0204569_19	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-0204569_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0204569_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0204569_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0204569_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0204569_20	PHROG	phrog_617	major head protein	head and packaging
UHGV-0204569_20	UniRef90	UniRef90_U6RKZ4	HK97 family phage major capsid protein	NA
UHGV-0204569_20	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-0204569_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0204569_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0204569_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0204569_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0204569_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0204569_21	UniRef90	UniRef90_A0A3E5G619	Phage gp6-like head-tail connector protein	NA
UHGV-0204569_21	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-0204569_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0204569_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0204569_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0204569_22	UniRef90	UniRef90_A0A496CCT1	Head-tail adaptor protein	NA
UHGV-0204569_22	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-0204569_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0204569_23	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-0204569_23	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-0204569_23	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0204569_24	UniRef90	UniRef90_UPI001CCBF085	NA	NA
UHGV-0204569_24	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-0204569_24	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0204569_25	PHROG	phrog_1407	major tail protein	tail
UHGV-0204569_25	UniRef90	UniRef90_UPI001913A485	phage tail tube protein	NA
UHGV-0204569_25	eggNOG-mapper	1268240.ATFI01000007_gene413	Phage tail tube protein	NA
UHGV-0204569_25	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0204569_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0204569_26	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-0204569_27	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0204569_27	UniRef90	UniRef90_A0A894KAN2	TMP_3 domain-containing protein	NA
UHGV-0204569_27	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-0204569_27	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0204569_27	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0204569_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0204569_27	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0204569_28	PHROG	phrog_30639	NA	unknown function
UHGV-0204569_28	eggNOG-mapper	997884.HMPREF1068_00297	NA	NA
UHGV-0204569_28	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0204569_29	PHROG	phrog_26822	NA	unknown function
UHGV-0204569_29	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-0204569_29	COG	COG4926	Phage-related protein	NA
UHGV-0204569_30	eggNOG-mapper	762968.HMPREF9441_03608	NA	NA
UHGV-0204569_31	UniRef90	UniRef90_UPI0011778F49	cell envelope integrity protein TolA	NA
UHGV-0204569_31	Structural annotation	PF14545	NA	NA
UHGV-0204569_32	PHROG	phrog_20680	NA	unknown function
UHGV-0204569_32	eggNOG-mapper	470145.BACCOP_01126	NA	NA
UHGV-0204569_33	UniRef90	UniRef90_A0A5B3GAI3	LamG domain-containing protein	NA
UHGV-0204569_33	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0204569_33	Structural annotation	PF00354	NA	NA
UHGV-0204569_35	Structural annotation	PF10043, NF008028	NA	NA
UHGV-0204569_36	PHROG	phrog_32423	NA	unknown function
UHGV-0204569_38	PHROG	phrog_873	endolysin	head and packaging
UHGV-0204569_38	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0204569_38	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0204569_39	Pfam	PF20647	NA	DUF6808
UHGV-0204569_39	Structural annotation	PF20647	NA	NA
UHGV-0204569_40	eggNOG-mapper	411901.BACCAC_01113	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0204569_45	Structural annotation	PF10628	NA	NA
UHGV-0204569_51	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0204569_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0204569_51	UniRef90	UniRef90_A0A1Y3VG18	Tyr recombinase domain-containing protein	NA
UHGV-0204569_51	eggNOG-mapper	1121100.JCM6294_508	Phage integrase SAM-like domain	NA
UHGV-0204569_51	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0204569_51	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0204569_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204569_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0204569_51	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0204569_52	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0204569_52	UniRef90	UniRef90_A0A316NWF8	DNA-binding protein	NA
UHGV-0204569_52	eggNOG-mapper	585502.HMPREF0645_0768	ORF6N domain	NA
UHGV-0204569_52	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0204569_52	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0204569_52	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0204569_53	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0204569_55	UniRef90	UniRef90_A0A3E4R1H1	Transcriptional regulator	NA
UHGV-0204569_55	eggNOG-mapper	563031.HMPREF0666_01107	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0204569_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0204569_55	Structural annotation	PF12844, NF007257, COG3655	NA	NA
UHGV-0204569_58	PHROG	phrog_415	polynucleotide kinase	other
UHGV-0204569_58	UniRef90	UniRef90_A0A2P5IIJ9	3'-phosphatase	NA
UHGV-0204569_58	eggNOG-mapper	1122182.KB903833_gene5604	AAA domain	NA
UHGV-0204569_58	COG	COG4639	Predicted kinase	NA
UHGV-0204569_58	Structural annotation	PF08235, MF_01250, TIGR01680, COG2503	NA	NA
UHGV-0204569_60	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0204569_60	UniRef90	UniRef90_UPI0004D4B25E	NA	NA
UHGV-0204569_60	eggNOG-mapper	411901.BACCAC_03918	DnaD domain protein	NA
UHGV-0204569_60	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0204569_60	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0204569_60	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0204569_63	eggNOG-mapper	679935.Alfi_1855	NA	NA
UHGV-0204569_63	Structural annotation	PF18275	NA	NA
UHGV-0204569_64	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0204569_64	PHROG	phrog_31265	NA	unknown function
UHGV-0204569_64	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0204569_64	COG	COG1357	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0204569	Yes	39,755 bps	49.37%	97.99%	0.9738
UHGV-1589269	No	11,699 bps	50.43%	27.96%	0.9798