vOTU-078643

Overview

vOTU representative UHGV-2208382

No. of genomes 4

Genome length 37,260 bps

Completeness 99.73% (high-quality)

Host Ruthenibacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-078643
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-03643 › vGENUS-20152 › vSUBGEN-39492 › vOTU-078643
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruthenibacterium
Host range breadth	Genus
Host prediction method	PHIST
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-2208382
BioSample	SAMN07211127
Genome length	37,260 bps
CheckV completeness	99.73% (high-quality)
CheckV contamination	0.00%
CDS count	49
CDS density	91.87%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2208382_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2208382_1	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-2208382_1	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-2208382_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2208382_3	PHROG	phrog_21498	NA	unknown function
UHGV-2208382_3	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-2208382_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2208382_3	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-2208382_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2208382_4	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-2208382_4	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-2208382_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2208382_4	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2208382_9	PHROG	phrog_25732	NA	unknown function
UHGV-2208382_9	UniRef90	UniRef90_UPI001898061F	NA	NA
UHGV-2208382_9	Pfam	PF04448	NA	DUF551
UHGV-2208382_11	PHROG	phrog_23870	NA	unknown function
UHGV-2208382_11	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-2208382_11	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-2208382_11	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2208382_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2208382_13	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2208382_13	UniRef90	UniRef90_A0A174E7S0	Methyltransferase	NA
UHGV-2208382_13	eggNOG-mapper	479437.Elen_2608	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2208382_13	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-2208382_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2208382_13	COG	COG0863	DNA modification methylase	NA
UHGV-2208382_13	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2208382_14	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-2208382_14	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2208382_14	UniRef90	UniRef90_A0A316PJJ9	DNA primase	NA
UHGV-2208382_14	eggNOG-mapper	748224.HMPREF9436_01462	Phage plasmid primase, P4 family	NA
UHGV-2208382_14	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-2208382_14	Pfam	PF19263	NA	DUF5906
UHGV-2208382_14	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-2208382_14	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-2208382_14	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-2208382_14	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-2208382_15	Structural annotation	PF05037	NA	NA
UHGV-2208382_16	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-2208382_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2208382_16	UniRef90	UniRef90_A0A316Q0I4	Helicase ATP-binding domain-containing protein	NA
UHGV-2208382_16	eggNOG-mapper	748224.HMPREF9436_01460	Type III restriction protein res subunit	NA
UHGV-2208382_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2208382_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2208382_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2208382_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2208382_16	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-2208382_17	Structural annotation	PF03838, MF_00130, TIGR00648, COG3331	NA	NA
UHGV-2208382_18	PHROG	phrog_1366	NA	unknown function
UHGV-2208382_18	UniRef90	UniRef90_A0A1I0CM14	AAA domain-containing protein	NA
UHGV-2208382_18	eggNOG-mapper	748224.HMPREF9436_01458	AAA domain	NA
UHGV-2208382_18	Pfam	PF13479	AAA domain	AAA_24
UHGV-2208382_18	COG	COG0468	RecA/RadA recombinase	NA
UHGV-2208382_18	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2208382_21	PHROG	phrog_1733	NA	unknown function
UHGV-2208382_21	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-2208382_21	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-2208382_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2208382_22	Pfam	PF12957	NA	DUF3846
UHGV-2208382_22	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-2208382_25	Structural annotation	PF12728	NA	NA
UHGV-2208382_26	UniRef90	UniRef90_A0A1Y4J3I8	XRE family transcriptional regulator	NA
UHGV-2208382_26	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-2208382_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2208382_27	UniRef90	UniRef90_A0A316PFQ5	HTH cro/C1-type domain-containing protein	NA
UHGV-2208382_27	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2208382_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2208382_27	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-2208382_28	PHROG	phrog_87	metallo-protease	other
UHGV-2208382_28	UniRef90	UniRef90_A0A329UQ57	Peptidase_M78 domain-containing protein	NA
UHGV-2208382_28	eggNOG-mapper	411471.SUBVAR_05140	NA	NA
UHGV-2208382_28	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2208382_29	PHROG	phrog_22683	NA	unknown function
UHGV-2208382_29	UniRef90	UniRef90_A0A425VTL3	NA	NA
UHGV-2208382_29	eggNOG-mapper	999425.HMPREF9186_01864	NA	NA
UHGV-2208382_29	AcrCatalog	cluster_3962	NA	NA
UHGV-2208382_29	Pfam	PF13783	NA	DUF4177
UHGV-2208382_29	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-2208382_30	KOfam	K14059	int; integrase	NA
UHGV-2208382_30	PHROG	phrog_1	integrase	integration and excision
UHGV-2208382_30	UniRef90	UniRef90_A0A6L6LPA2	Tyrosine-type recombinase/integrase	NA
UHGV-2208382_30	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-2208382_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-2208382_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2208382_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2208382_30	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2208382_31	PHROG	phrog_1129	holin	lysis
UHGV-2208382_31	UniRef90	UniRef90_A0A316PMB0	Enolase	NA
UHGV-2208382_31	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2208382_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2208382_31	Structural annotation	PF06946	NA	NA
UHGV-2208382_32	PHROG	phrog_4105	NA	unknown function
UHGV-2208382_32	eggNOG-mapper	1687.BCOR_0969	NA	NA
UHGV-2208382_33	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-2208382_33	UniRef90	UniRef90_G9RT42	Peptidase_M23 domain-containing protein	NA
UHGV-2208382_33	eggNOG-mapper	665956.HMPREF1032_02708	NA	NA
UHGV-2208382_33	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2208382_33	Structural annotation	PF21086, MF_01450, NF010999, COG3830	NA	NA
UHGV-2208382_34	KOfam	K14059	int; integrase	NA
UHGV-2208382_34	PHROG	phrog_1	integrase	integration and excision
UHGV-2208382_34	UniRef90	UniRef90_A0A0D8IYN9	Tyr recombinase domain-containing protein	NA
UHGV-2208382_34	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2208382_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2208382_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2208382_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2208382_34	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2208382_35	PHROG	phrog_31398	NA	unknown function
UHGV-2208382_35	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-2208382_35	eggNOG-mapper	908937.Prede_2517	tail collar domain protein	NA
UHGV-2208382_35	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2208382_35	COG	COG4675	Phage tail collar domain	NA
UHGV-2208382_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2208382_36	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-2208382_36	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2208382_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2208382_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2208382_36	COG	COG4926	Phage-related protein	NA
UHGV-2208382_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2208382_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2208382_37	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-2208382_37	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-2208382_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-2208382_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2208382_38	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2208382_38	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-2208382_38	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-2208382_38	eggNOG-mapper	1399942.U3PFW9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2208382_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2208382_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2208382_38	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2208382_40	PHROG	phrog_88	major tail protein	tail
UHGV-2208382_40	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-2208382_40	eggNOG-mapper	508419.F8J168_9CAUD	NA	NA
UHGV-2208382_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2208382_40	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-2208382_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2208382_41	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-2208382_41	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-2208382_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2208382_41	Structural annotation	TIGR01725	NA	NA
UHGV-2208382_42	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-2208382_42	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2208382_43	PHROG	phrog_19734	NA	unknown function
UHGV-2208382_43	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-2208382_43	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-2208382_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2208382_44	PHROG	phrog_749	NA	unknown function
UHGV-2208382_44	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-2208382_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-2208382_45	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-2208382_45	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2208382_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2208382_45	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2208382_45	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2208382_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2208382_45	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2208382_46	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2208382_46	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2208382_46	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-2208382_46	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-2208382_46	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2208382_46	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2208382_46	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2208382_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-2208382_47	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-2208382_47	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2208382_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2208382_47	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2208382_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2208382_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2208382_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2208382_48	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-2208382_48	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-2208382_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2208382_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2208382_48	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2208382_49	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2208382_49	UniRef90	UniRef90_A0A1E3C4W5	RNA polymerase subunit sigma-70	NA
UHGV-2208382_49	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2208382_49	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2208382_49	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2208382	Yes	37,260 bps	55.04%	99.73%	0.9774
UHGV-0877728	No	32,640 bps	54.94%	87.90%	0.9760
UHGV-1672905	No	17,779 bps	53.04%	47.54%	0.9794
UHGV-1817835	No	15,900 bps	53.58%	42.50%	0.9803