vOTU-078802

Overview

vOTU representative UHGV-0202122

No. of genomes 5

Genome length 36,488 bps

Completeness 99.90% (high-quality)

Host Lacticaseibacillus paracasei

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-078802
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-01575 › vGENUS-10920 › vSUBGEN-14959 › vOTU-078802
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Lactobacillaceae › Lacticaseibacillus › Lacticaseibacillus paracasei
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0202122
BioSample	SAMN05826623
Genome length	36,488 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	47
CDS density	91.91%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202122_1	KOfam	K14059	int; integrase	NA
UHGV-0202122_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0202122_1	UniRef90	UniRef90_U5U6W4	Integrase	NA
UHGV-0202122_1	eggNOG-mapper	543734.LCABL_10790	Belongs to the 'phage' integrase family	NA
UHGV-0202122_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0202122_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0202122_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0202122_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0202122_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0202122_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0202122_2	UniRef90	UniRef90_UPI001E3B80FE	Abi family protein	NA
UHGV-0202122_2	eggNOG-mapper	1423807.BACO01000050_gene1471	Abi-like protein	NA
UHGV-0202122_2	PADLOC	AbiD	AbiD	Abi
UHGV-0202122_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0202122_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0202122_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0202122_3	UniRef90	UniRef90_A0A5B7SWF6	FlgT_C domain-containing protein	NA
UHGV-0202122_3	Structural annotation	PF16538	NA	NA
UHGV-0202122_4	PHROG	phrog_32160	NA	unknown function
UHGV-0202122_4	UniRef90	UniRef90_UPI0006D82BFC	SH3 domain-containing protein	NA
UHGV-0202122_4	eggNOG-mapper	1114972.AUAW01000006_gene2330	NA	NA
UHGV-0202122_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0202122_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0202122_5	UniRef90	UniRef90_K6Q9R7	Putative repressor protein	NA
UHGV-0202122_5	eggNOG-mapper	279281.Q6J1W4_9CAUD	sequence-specific DNA binding	NA
UHGV-0202122_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0202122_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202122_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0202122_5	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0202122_6	UniRef90	UniRef90_K6PBU1	HTH cro/C1-type domain-containing protein	NA
UHGV-0202122_6	eggNOG-mapper	39103.U5U3X7_9CAUD	sequence-specific DNA binding	NA
UHGV-0202122_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202122_8	UniRef90	UniRef90_UPI001CDBBFDE	zinc ribbon-containing protein	NA
UHGV-0202122_8	eggNOG-mapper	1123009.AUID01000044_gene2308	Zinc-ribbon containing domain	NA
UHGV-0202122_8	Pfam	PF07295	Zinc-ribbon containing domain	DUF1451
UHGV-0202122_8	Structural annotation	TIGR02605, COG1996	NA	NA
UHGV-0202122_9	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0202122_9	UniRef90	UniRef90_A0A5P8M4L2	ORF6N domain-containing protein	NA
UHGV-0202122_9	eggNOG-mapper	543734.LCABL_10860	ORF6N domain	NA
UHGV-0202122_9	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0202122_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0202122_9	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0202122_10	PHROG	phrog_823	NA	unknown function
UHGV-0202122_10	UniRef90	UniRef90_UPI00194DBC78	NA	NA
UHGV-0202122_10	eggNOG-mapper	543734.LCABL_10870	NA	NA
UHGV-0202122_10	Pfam	PF05595	NA	DUF771
UHGV-0202122_11	PHROG	phrog_7103	NA	unknown function
UHGV-0202122_12	PHROG	phrog_2211	NA	unknown function
UHGV-0202122_12	eggNOG-mapper	1536774.H70357_31415	NA	NA
UHGV-0202122_13	PHROG	phrog_5144	NA	unknown function
UHGV-0202122_13	UniRef90	UniRef90_A0A0P0I353	Transposase	NA
UHGV-0202122_14	PHROG	phrog_17254	NA	unknown function
UHGV-0202122_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0202122_15	UniRef90	UniRef90_UPI000F7858DB	siphovirus Gp157 family protein	NA
UHGV-0202122_15	eggNOG-mapper	543734.LCABL_10930	Siphovirus Gp157	NA
UHGV-0202122_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0202122_15	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0202122_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0202122_16	UniRef90	UniRef90_A0A0C9PWI1	Phage DNA-binding protein	NA
UHGV-0202122_16	eggNOG-mapper	1423732.BALS01000058_gene2824	AAA domain	NA
UHGV-0202122_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0202122_16	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0202122_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0202122_17	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0202122_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0202122_17	UniRef90	UniRef90_A0A0C9NWV0	Putative helicase	NA
UHGV-0202122_17	eggNOG-mapper	51369.Q9T0Y3_9CAUD	helicase activity	NA
UHGV-0202122_17	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0202122_17	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0202122_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0202122_17	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0202122_18	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0202122_18	UniRef90	UniRef90_A0A0C9PND0	Putative single stranded binding protein	NA
UHGV-0202122_18	eggNOG-mapper	51369.Q9T0Y2_9CAUD	NA	NA
UHGV-0202122_18	Pfam	PF05037	NA	DUF669
UHGV-0202122_18	Structural annotation	PF05037, MF_00720, NF004948, COG2965	NA	NA
UHGV-0202122_19	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0202122_19	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0202122_19	UniRef90	UniRef90_Q9T0Y1	Putative primase	NA
UHGV-0202122_19	eggNOG-mapper	51369.Q9T0Y1_9CAUD	hydrolase activity	NA
UHGV-0202122_19	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0202122_19	Pfam	PF19263	NA	DUF5906
UHGV-0202122_19	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0202122_19	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0202122_19	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0202122_21	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0202122_21	UniRef90	UniRef90_A0A0C9QCS1	VRR-NUC domain-containing protein	NA
UHGV-0202122_21	eggNOG-mapper	1423732.BALS01000058_gene2829	VRR_NUC	NA
UHGV-0202122_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0202122_21	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0202122_22	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0202122_22	UniRef90	UniRef90_K0N9N6	NA	NA
UHGV-0202122_22	eggNOG-mapper	543734.LCABL_11010	NA	NA
UHGV-0202122_23	PHROG	phrog_13069	NA	unknown function
UHGV-0202122_24	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0202122_24	UniRef90	UniRef90_A0A422LLW5	Bacteriophage phi 1.45 protein-like protein	NA
UHGV-0202122_24	eggNOG-mapper	543734.LCABL_11030	HNH endonuclease	NA
UHGV-0202122_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0202122_24	Structural annotation	PF13392	NA	NA
UHGV-0202122_25	PHROG	phrog_17171	NA	unknown function
UHGV-0202122_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0202122_26	UniRef90	UniRef90_K0N3N9	Phage transcriptional regulator, RinA family	NA
UHGV-0202122_26	eggNOG-mapper	543734.LCABL_11050	Transcriptional regulator, RinA family	NA
UHGV-0202122_26	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0202122_26	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0202122_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0202122_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0202122_27	UniRef90	UniRef90_K0N9P0	HNH domain-containing protein	NA
UHGV-0202122_27	eggNOG-mapper	543734.LCABL_09800	HNH endonuclease	NA
UHGV-0202122_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0202122_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0202122_28	PHROG	phrog_1066	NA	unknown function
UHGV-0202122_28	eggNOG-mapper	543734.LCABL_09810	NA	NA
UHGV-0202122_28	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0202122_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0202122_29	UniRef90	UniRef90_K0MU46	Phage terminase-like protein, large subunit	NA
UHGV-0202122_29	eggNOG-mapper	543734.LCABL_11080	overlaps another CDS with the same product name	NA
UHGV-0202122_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0202122_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0202122_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0202122_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0202122_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0202122_30	UniRef90	UniRef90_K6S8Y6	Phage-associated portal protein	NA
UHGV-0202122_30	eggNOG-mapper	543734.LCABL_11090	Phage portal protein	NA
UHGV-0202122_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0202122_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0202122_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0202122_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0202122_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0202122_31	UniRef90	UniRef90_A0A6H3FSE6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0202122_31	eggNOG-mapper	543734.LCABL_11100	Belongs to the peptidase S14 family	NA
UHGV-0202122_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0202122_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0202122_31	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0202122_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0202122_32	UniRef90	UniRef90_A0A0P0IV50	Major capsid protein	NA
UHGV-0202122_32	eggNOG-mapper	543734.LCABL_11110	Phage capsid family	NA
UHGV-0202122_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0202122_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0202122_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0202122_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0202122_34	PHROG	phrog_4609	NA	unknown function
UHGV-0202122_34	UniRef90	UniRef90_K6RR14	NA	NA
UHGV-0202122_34	eggNOG-mapper	543734.LCABL_09870	NA	NA
UHGV-0202122_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0202122_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0202122_35	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-0202122_35	UniRef90	UniRef90_K0N392	Head-tail adaptor protein	NA
UHGV-0202122_35	eggNOG-mapper	543734.LCABL_09880	Phage head-tail joining protein	NA
UHGV-0202122_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0202122_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0202122_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0202122_36	UniRef90	UniRef90_K0N3E7	NA	NA
UHGV-0202122_36	eggNOG-mapper	543734.LCABL_11150	NA	NA
UHGV-0202122_36	Structural annotation	PF20765	NA	NA
UHGV-0202122_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0202122_37	UniRef90	UniRef90_UPI001C8BC514	HK97 gp10 family phage protein	NA
UHGV-0202122_37	eggNOG-mapper	543734.LCABL_09900	NA	NA
UHGV-0202122_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0202122_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0202122_37	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0202122_38	PHROG	phrog_11502	tail protein	tail
UHGV-0202122_38	UniRef90	UniRef90_A0A6H3FTM3	Major tail protein, phi13 family	NA
UHGV-0202122_38	eggNOG-mapper	543734.LCABL_09910	NA	NA
UHGV-0202122_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0202122_39	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-0202122_39	UniRef90	UniRef90_K0MTV4	NA	NA
UHGV-0202122_39	eggNOG-mapper	543734.LCABL_11180	NA	NA
UHGV-0202122_39	Structural annotation	PF11836	NA	NA
UHGV-0202122_40	KOfam	K10396	KIF5; kinesin family member 5	NA
UHGV-0202122_40	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0202122_40	UniRef90	UniRef90_K0N3P8	PhageMin_Tail domain-containing protein	NA
UHGV-0202122_40	eggNOG-mapper	543734.LCABL_11200	Phage tail tape measure protein	NA
UHGV-0202122_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0202122_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0202122_40	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0202122_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0202122_41	UniRef90	UniRef90_K0N3Q3	Tail protein	NA
UHGV-0202122_41	eggNOG-mapper	543734.LCABL_11210	phage tail	NA
UHGV-0202122_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0202122_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0202122_42	PHROG	phrog_1330	tail protein	tail
UHGV-0202122_42	UniRef90	UniRef90_UPI0018AD402B	gp58-like family protein	NA
UHGV-0202122_42	eggNOG-mapper	543734.LCABL_11220	gp58-like protein	NA
UHGV-0202122_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0202122_42	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0202122_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0202122_42	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0202122_42	Structural annotation	PF14594, PF21582, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0202122_43	PHROG	phrog_1401	NA	unknown function
UHGV-0202122_43	UniRef90	UniRef90_UPI000F775C84	NA	NA
UHGV-0202122_43	eggNOG-mapper	543734.LCABL_09970	NA	NA
UHGV-0202122_43	Pfam	PF07761	NA	DUF1617
UHGV-0202122_43	Structural annotation	PF07761	NA	NA
UHGV-0202122_44	PHROG	phrog_2566	NA	unknown function
UHGV-0202122_44	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0202122_44	eggNOG-mapper	543734.LCABL_09980	NA	NA
UHGV-0202122_45	PHROG	phrog_1009	NA	unknown function
UHGV-0202122_45	UniRef90	UniRef90_S2NA97	NA	NA
UHGV-0202122_45	eggNOG-mapper	568703.LGG_01141	NA	NA
UHGV-0202122_46	PHROG	phrog_10091	holin	lysis
UHGV-0202122_46	UniRef90	UniRef90_UPI001F223C42	phage holin	NA
UHGV-0202122_46	eggNOG-mapper	51369.Q9MCC9_9CAUD	Bacteriophage holin	NA
UHGV-0202122_46	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0202122_46	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0202122_46	Structural annotation	PF04531, TIGR01598	NA	NA
UHGV-0202122_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0202122_47	PHROG	phrog_3393	endolysin	lysis
UHGV-0202122_47	UniRef90	UniRef90_UPI001899AEEF	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0202122_47	eggNOG-mapper	543734.LCABL_11280	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0202122_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0202122_47	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0202122_47	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0202122	Yes	36,488 bps	45.87%	99.90%	0.9693
UHGV-0294521	No	19,982 bps	46.09%	57.59%	0.9800
UHGV-1574401	No	16,138 bps	46.02%	46.54%	0.9817
UHGV-1802385	No	15,826 bps	46.43%	45.76%	0.9741
UHGV-0370748	No	10,738 bps	46.27%	30.98%	0.9669