vOTU-079461

Overview

vOTU representative UHGV-2181964

No. of genomes 3

Genome length 51,603 bps

Completeness 90.67% (high-quality)

Host Lachnospira

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-079461
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-00026 › vGENUS-00148 › vSUBGEN-38840 › vOTU-079461
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Lachnospira
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2181964
BioSample	SAMEA3708729
Genome length	51,603 bps
CheckV completeness	90.67% (high-quality)
CheckV contamination	0.00%
CDS count	87
CDS density	88.42%
tRNA count	3
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2181964_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-2181964_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-2181964_1	Structural annotation	PF16677	NA	NA
UHGV-2181964_2	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-2181964_2	UniRef90	UniRef90_R7BGE2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2181964_2	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-2181964_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-2181964_2	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-2181964_2	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-2181964_4	Structural annotation	PF12990	NA	NA
UHGV-2181964_5	PHROG	phrog_22444	NA	unknown function
UHGV-2181964_5	UniRef90	UniRef90_UPI001CC2634F	helix-turn-helix domain-containing protein	NA
UHGV-2181964_5	eggNOG-mapper	1121422.AUMW01000042_gene1260	DnaD domain protein	NA
UHGV-2181964_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2181964_5	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-2181964_7	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-2181964_7	Structural annotation	PF05225, COG2886	NA	NA
UHGV-2181964_10	PHROG	phrog_28328	NA	unknown function
UHGV-2181964_14	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-2181964_14	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-2181964_14	Structural annotation	PF14359, COG3613	NA	NA
UHGV-2181964_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-2181964_15	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-2181964_15	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-2181964_15	COG	COG5410	NA	NA
UHGV-2181964_15	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-2181964_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2181964_16	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-2181964_16	Structural annotation	PF02996	NA	NA
UHGV-2181964_17	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-2181964_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-2181964_18	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-2181964_18	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2181964_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2181964_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2181964_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-2181964_20	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-2181964_20	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-2181964_20	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2181964_20	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2181964_21	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-2181964_21	Structural annotation	PF21169	NA	NA
UHGV-2181964_22	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-2181964_23	PHROG	phrog_4105	NA	unknown function
UHGV-2181964_23	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-2181964_24	PHROG	phrog_1129	holin	lysis
UHGV-2181964_24	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-2181964_24	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2181964_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2181964_24	Structural annotation	PF06946	NA	NA
UHGV-2181964_25	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-2181964_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2181964_26	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-2181964_27	Structural annotation	PF05657	NA	NA
UHGV-2181964_28	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-2181964_28	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-2181964_30	PHROG	phrog_36112	NA	unknown function
UHGV-2181964_30	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-2181964_30	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-2181964_30	Structural annotation	PF10666	NA	NA
UHGV-2181964_32	PHROG	phrog_28918	NA	unknown function
UHGV-2181964_32	UniRef90	UniRef90_A0A1C5WKI4	Phage-related protein	NA
UHGV-2181964_32	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-2181964_32	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2181964_34	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-2181964_34	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-2181964_36	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2181964_36	UniRef90	UniRef90_R7BHB1	Phage regulatory protein Rha family	NA
UHGV-2181964_36	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-2181964_36	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2181964_36	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2181964_36	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2181964_36	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2181964_39	PHROG	phrog_1194	NA	unknown function
UHGV-2181964_39	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-2181964_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2181964_40	Structural annotation	PF07761	NA	NA
UHGV-2181964_41	PHROG	phrog_6616	tail protein	tail
UHGV-2181964_41	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-2181964_41	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2181964_41	COG	COG4926	Phage-related protein	NA
UHGV-2181964_41	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2181964_43	KOfam	K07273	acm; lysozyme	NA
UHGV-2181964_43	PHROG	phrog_291	endolysin	lysis
UHGV-2181964_43	UniRef90	UniRef90_UPI001D04C319	glycoside hydrolase family 25 protein	NA
UHGV-2181964_43	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-2181964_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2181964_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2181964_43	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-2181964_45	Structural annotation	PF03444, MF_00732, NF003025, COG1321	NA	NA
UHGV-2181964_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2181964_46	UniRef90	UniRef90_UPI001D081DA8	helix-turn-helix domain-containing protein	NA
UHGV-2181964_46	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-2181964_46	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2181964_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2181964_46	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2181964_47	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-2181964_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2181964_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2181964_48	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2181964_48	UniRef90	UniRef90_A0A3D5LQU6	Toxin Bro	NA
UHGV-2181964_48	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-2181964_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2181964_48	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2181964_48	COG	COG3617	Prophage antirepressor	NA
UHGV-2181964_48	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2181964_50	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2181964_50	Structural annotation	PF10552	NA	NA
UHGV-2181964_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2181964_53	PHROG	phrog_26861	NA	unknown function
UHGV-2181964_53	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-2181964_53	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-2181964_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2181964_53	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-2181964_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2181964_53	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-2181964_55	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-2181964_55	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2181964_55	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-2181964_55	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-2181964_55	Pfam	PF13476	AAA domain	AAA_23
UHGV-2181964_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2181964_55	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2181964_56	PHROG	phrog_2164	NA	unknown function
UHGV-2181964_57	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2181964_57	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2181964_57	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-2181964_57	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-2181964_57	Pfam	PF03837	RecT family	RecT
UHGV-2181964_57	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2181964_57	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2181964_57	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2181964_58	PHROG	phrog_25456	NA	unknown function
UHGV-2181964_59	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2181964_59	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2181964_59	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-2181964_59	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-2181964_59	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-2181964_59	dbAPIS	APIS058	NA	NA
UHGV-2181964_59	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2181964_59	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2181964_61	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-2181964_61	Structural annotation	PF18300	NA	NA
UHGV-2181964_63	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-2181964_63	eggNOG-mapper	592028.GCWU000321_00789	NA	NA
UHGV-2181964_63	Pfam	PF07866	NA	DUF1653
UHGV-2181964_63	COG	COG4728	NA	NA
UHGV-2181964_63	Structural annotation	PF07866, COG4728	NA	NA
UHGV-2181964_64	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2181964_64	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2181964_64	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-2181964_64	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-2181964_64	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2181964_64	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2181964_64	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2181964_64	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2181964_64	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2181964_65	PHROG	phrog_19106	NA	unknown function
UHGV-2181964_65	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-2181964_65	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-2181964_65	Structural annotation	TIGR01453	NA	NA
UHGV-2181964_67	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2181964_67	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2181964_67	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-2181964_67	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-2181964_67	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2181964_67	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2181964_67	COG	COG0863	DNA modification methylase	NA
UHGV-2181964_67	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2181964_70	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2181964_70	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-2181964_70	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-2181964_70	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-2181964_73	PHROG	phrog_9804	NA	unknown function
UHGV-2181964_73	UniRef90	UniRef90_A0A292SPH8	Inhibitor_G39P domain-containing protein	NA
UHGV-2181964_73	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-2181964_73	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-2181964_73	Structural annotation	PF11417	NA	NA
UHGV-2181964_76	PHROG	phrog_16129	excisionase	integration and excision
UHGV-2181964_76	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-2181964_76	eggNOG-mapper	658088.HMPREF0987_01415	Excisionase from transposon Tn916	NA
UHGV-2181964_76	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2181964_76	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-2181964_76	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2181964_76	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-2181964_77	KOfam	K14059	int; integrase	NA
UHGV-2181964_77	PHROG	phrog_1	integrase	integration and excision
UHGV-2181964_77	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-2181964_77	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-2181964_77	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2181964_77	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2181964_77	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2181964_77	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2181964_79	PHROG	phrog_21718	NA	unknown function
UHGV-2181964_79	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-2181964_79	Structural annotation	NF033819	NA	NA
UHGV-2181964_80	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-2181964_81	PHROG	phrog_16490	NA	unknown function
UHGV-2181964_81	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2181964_82	PHROG	phrog_20016	NA	unknown function
UHGV-2181964_82	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2181964_82	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2181964_82	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2181964_83	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-2181964_85	PHROG	phrog_1233	NA	unknown function
UHGV-2181964_85	eggNOG-mapper	397290.C810_01336	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2181964	Yes	51,603 bps	36.41%	90.67%	0.9793
UHGV-0111748	No	45,683 bps	36.32%	80.41%	0.9802
UHGV-1561083	No	11,945 bps	36.16%	21.12%	0.9820