vOTU-081076

Overview

vOTU representative UHGV-0197789

No. of genomes 4

Genome length 30,298 bps

Completeness 99.90% (high-quality)

Host Staphylococcus epidermidis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-081076
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-07428 › vGENUS-20582 › vSUBGEN-40621 › vOTU-081076
Host taxonomy	Bacteria › Firmicutes › Bacilli › Staphylococcales › Staphylococcaceae › Staphylococcus › Staphylococcus epidermidis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0197789
BioSample	NA
Genome length	30,298 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	39
CDS density	91.70%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197789_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0197789_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197789_1	UniRef90	UniRef90_UPI00041EBC88	HNH endonuclease	NA
UHGV-0197789_1	eggNOG-mapper	1123263.AUKY01000046_gene464	HNH endonuclease	NA
UHGV-0197789_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0197789_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0197789_3	Structural annotation	PF04545, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0197789_4	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0197789_4	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0197789_4	eggNOG-mapper	1122981.AUME01000026_gene554	YqaJ viral recombinase family	NA
UHGV-0197789_4	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0197789_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0197789_4	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0197789_5	PHROG	phrog_6244	NA	unknown function
UHGV-0197789_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0197789_6	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0197789_6	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0197789_6	UniRef90	UniRef90_A0A843HPS1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0197789_6	eggNOG-mapper	1278311.AUAL01000001_gene43	crossover junction endodeoxyribonuclease activity	NA
UHGV-0197789_6	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0197789_6	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0197789_6	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0197789_7	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0197789_7	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0197789_7	UniRef90	UniRef90_A0A242K8R7	AAA domain-containing protein	NA
UHGV-0197789_7	eggNOG-mapper	1123263.AUKY01000015_gene1593	Primase C terminal 2 (PriCT-2)	NA
UHGV-0197789_7	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0197789_7	Pfam	PF13481	AAA domain	AAA_25
UHGV-0197789_7	COG	COG3598	RecA-family ATPase	NA
UHGV-0197789_7	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0197789_8	PHROG	phrog_2698	NA	unknown function
UHGV-0197789_8	eggNOG-mapper	883114.HMPREF9709_01213	NA	NA
UHGV-0197789_10	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0197789_10	UniRef90	UniRef90_A0A3A6N7Y2	ATP-binding protein	NA
UHGV-0197789_10	eggNOG-mapper	910314.HMPREF9220_0634	AAA domain	NA
UHGV-0197789_10	Pfam	PF13479	AAA domain	AAA_24
UHGV-0197789_12	KOfam	K14059	int; integrase	NA
UHGV-0197789_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0197789_12	UniRef90	UniRef90_A0A6N7S5Q9	Tyrosine-type recombinase/integrase	NA
UHGV-0197789_12	eggNOG-mapper	1488328.JMCL01000016_gene408	Belongs to the 'phage' integrase family	NA
UHGV-0197789_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0197789_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0197789_12	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0197789_14	PHROG	phrog_4105	NA	unknown function
UHGV-0197789_14	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0197789_15	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0197789_19	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0197789_20	PHROG	phrog_13256	NA	unknown function
UHGV-0197789_20	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0197789_21	eggNOG-mapper	861454.HMPREF9099_00683	SH3, type 3 domain protein	NA
UHGV-0197789_21	Pfam	PF05257	CHAP domain	CHAP
UHGV-0197789_21	COG	COG3942	Surface antigen	NA
UHGV-0197789_21	Structural annotation	PF08239, TIGR02594, COG3942, COG4991	NA	NA
UHGV-0197789_23	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0197789_23	UniRef90	UniRef90_UPI00189A8481	phage tail protein	NA
UHGV-0197789_23	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0197789_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0197789_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0197789_23	COG	COG4926	Phage-related protein	NA
UHGV-0197789_24	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0197789_24	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0197789_24	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0197789_24	COG	COG4722	Phage-related protein YomH	NA
UHGV-0197789_24	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0197789_25	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0197789_25	UniRef90	UniRef90_A0A425XBK8	Phage tail tape measure protein	NA
UHGV-0197789_25	eggNOG-mapper	877414.ATWA01000019_gene2048	Phage tail tape measure protein, TP901 family	NA
UHGV-0197789_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0197789_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0197789_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0197789_25	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0197789_26	PHROG	phrog_709	NA	unknown function
UHGV-0197789_26	UniRef90	UniRef90_C2XXF5	Prophage pi2 protein 40	NA
UHGV-0197789_26	eggNOG-mapper	315730.BcerKBAB4_3583	NA	NA
UHGV-0197789_26	Structural annotation	PF19591	NA	NA
UHGV-0197789_27	PHROG	phrog_88	major tail protein	tail
UHGV-0197789_27	UniRef90	UniRef90_A0A7C6KQQ3	Phage tail protein	NA
UHGV-0197789_27	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0197789_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0197789_27	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0197789_28	PHROG	phrog_78	tail terminator	connector
UHGV-0197789_28	eggNOG-mapper	1384057.CD33_14165	NA	NA
UHGV-0197789_28	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0197789_29	UniRef90	UniRef90_A0A8E3N0V9	HK97 gp10 family phage protein	NA
UHGV-0197789_29	eggNOG-mapper	471875.RUMLAC_02243	NA	NA
UHGV-0197789_29	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0197789_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0197789_30	UniRef90	UniRef90_UPI001959FB60	phage head closure protein	NA
UHGV-0197789_30	eggNOG-mapper	1211814.CAPG01000074_gene3451	head-tail adaptor	NA
UHGV-0197789_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0197789_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0197789_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0197789_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0197789_33	UniRef90	UniRef90_A0A843HUX6	Phage major capsid protein	NA
UHGV-0197789_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0197789_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0197789_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0197789_34	KOfam	K06904	NA	NA
UHGV-0197789_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0197789_34	UniRef90	UniRef90_UPI0004220697	HK97 family phage prohead protease	NA
UHGV-0197789_34	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0197789_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0197789_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0197789_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0197789_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0197789_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0197789_35	UniRef90	UniRef90_UPI000488BE8B	phage portal protein	NA
UHGV-0197789_35	eggNOG-mapper	1123263.AUKY01000046_gene467	Portal protein	NA
UHGV-0197789_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0197789_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0197789_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0197789_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0197789_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0197789_36	UniRef90	UniRef90_UPI0004231217	terminase large subunit	NA
UHGV-0197789_36	eggNOG-mapper	1123263.AUKY01000046_gene466	large subunit	NA
UHGV-0197789_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0197789_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0197789_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0197789_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0197789_37	PHROG	phrog_13845	NA	unknown function
UHGV-0197789_37	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0197789_37	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0197789_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0197789_38	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0197789_38	UniRef90	UniRef90_UPI00164C574E	DNA adenine methylase	NA
UHGV-0197789_38	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0197789_38	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0197789_38	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0197789_38	Structural annotation	PF02086, NF008152, COG0338	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0197789	Yes	30,298 bps	47.72%	99.90%	0.9797
UHGV-1387904	No	30,316 bps	47.73%	99.90%	0.9797
UHGV-1453389	No	15,329 bps	48.49%	52.91%	0.9803
UHGV-0149765	No	22,219 bps	48.00%	41.88%	0.9782