UHGV-0042713

Genome information

Genome length 44,348 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9643

Prediction confidence Confident

Genome information
Genome ID	UHGV-0042713
vOTU ID	vOTU-061534
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2802
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9643
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.4
Jumbo phage	No

Genome content
Genome length	44,348 bps
GC content	56.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.76%
Average CDS length	641.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0042713_1	KOfam	K14059	int; integrase	NA
UHGV-0042713_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0042713_1	UniRef90	UniRef90_UPI0013EDD93A	site-specific integrase	NA
UHGV-0042713_1	eggNOG-mapper	665942.HMPREF1022_00104	Phage integrase family	NA
UHGV-0042713_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0042713_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0042713_1	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0042713_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0042713_3	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0042713_3	UniRef90	UniRef90_G1UND3	Bro-N domain-containing protein	NA
UHGV-0042713_3	eggNOG-mapper	665942.HMPREF1022_00106	Phage antirepressor protein KilAC domain	NA
UHGV-0042713_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0042713_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0042713_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0042713_3	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0042713_4	eggNOG-mapper	665942.HMPREF1022_00107	NA	NA
UHGV-0042713_5	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0042713_6	PHROG	phrog_874	NA	unknown function
UHGV-0042713_6	eggNOG-mapper	665942.HMPREF1022_00109	NA	NA
UHGV-0042713_6	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0042713_7	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0042713_7	UniRef90	UniRef90_UPI00038F7407	class I SAM-dependent methyltransferase	NA
UHGV-0042713_7	eggNOG-mapper	665942.HMPREF1022_00110	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0042713_7	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0042713_7	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0042713_7	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0042713_7	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0042713_12	PHROG	phrog_18900	NA	unknown function
UHGV-0042713_12	eggNOG-mapper	1304872.JAGC01000005_gene1616	NA	NA
UHGV-0042713_12	Structural annotation	PF11535, MF_00948, NF008636, COG4568	NA	NA
UHGV-0042713_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0042713_13	UniRef90	UniRef90_UPI0004260CAC	siphovirus Gp157 family protein	NA
UHGV-0042713_13	eggNOG-mapper	665942.HMPREF1022_00116	PFAM Gp157 family protein	NA
UHGV-0042713_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0042713_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0042713_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0042713_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0042713_14	UniRef90	UniRef90_G1UNE4	Single-stranded DNA-binding protein	NA
UHGV-0042713_14	eggNOG-mapper	665942.HMPREF1022_00117	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0042713_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0042713_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0042713_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0042713_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0042713_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0042713_15	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0042713_15	UniRef90	UniRef90_A0A562PPD0	ERF superfamily protein	NA
UHGV-0042713_15	eggNOG-mapper	665942.HMPREF1022_00118	ERF superfamily	NA
UHGV-0042713_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0042713_15	Structural annotation	PF04404	NA	NA
UHGV-0042713_16	eggNOG-mapper	665942.HMPREF1022_00119	NA	NA
UHGV-0042713_17	eggNOG-mapper	457398.HMPREF0326_02545	NA	NA
UHGV-0042713_18	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0042713_18	PHROG	phrog_923	NA	unknown function
UHGV-0042713_18	eggNOG-mapper	665942.HMPREF1022_00121	Pentapeptide repeats (8 copies)	NA
UHGV-0042713_18	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0042713_18	NCBIFam	NF038108.1	Cys-every-fifth RiPP peptide CefA	NA
UHGV-0042713_18	COG	COG1357	NA	NA
UHGV-0042713_18	Structural annotation	PF13599, NF011744, COG1357	NA	NA
UHGV-0042713_20	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0042713_20	eggNOG-mapper	665942.HMPREF1022_00123	nucleotidyltransferase activity	NA
UHGV-0042713_20	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0042713_24	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0042713_24	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0042713_24	UniRef90	UniRef90_G1UNF4	HTH cro/C1-type domain-containing protein	NA
UHGV-0042713_24	eggNOG-mapper	665942.HMPREF1022_00127	Peptidase S24-like	NA
UHGV-0042713_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0042713_24	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0042713_24	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0042713_24	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0042713_26	UniRef90	UniRef90_UPI001C3B8A40	XRE family transcriptional regulator	NA
UHGV-0042713_26	eggNOG-mapper	665942.HMPREF1022_00130	NA	NA
UHGV-0042713_26	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0042713_28	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0042713_28	UniRef90	UniRef90_UPI001D09F98A	helix-turn-helix domain-containing protein	NA
UHGV-0042713_28	eggNOG-mapper	665942.HMPREF1022_00132	DnaD domain protein	NA
UHGV-0042713_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0042713_28	Structural annotation	PF07106, TIGR01610, COG0735	NA	NA
UHGV-0042713_29	UniRef90	UniRef90_A0A6J5QW72	VRR-NUC domain containing protein	NA
UHGV-0042713_29	eggNOG-mapper	665942.HMPREF1022_00133	NA	NA
UHGV-0042713_31	eggNOG-mapper	665942.HMPREF1022_00134	NA	NA
UHGV-0042713_32	PHROG	phrog_24780	NA	unknown function
UHGV-0042713_32	UniRef90	UniRef90_G1UNG2	Pesticin domain-containing protein	NA
UHGV-0042713_32	eggNOG-mapper	665942.HMPREF1022_00135	Bacterial toxin homologue of phage lysozyme, C-term	NA
UHGV-0042713_32	Pfam	PF16754	Bacterial toxin homologue of phage lysozyme, C-term	Pesticin
UHGV-0042713_32	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0042713_32	Structural annotation	PF16754, MF_04136, COG3772	NA	NA
UHGV-0042713_33	eggNOG-mapper	457398.HMPREF0326_02527	NA	NA
UHGV-0042713_34	eggNOG-mapper	665942.HMPREF1022_00137	NA	NA
UHGV-0042713_35	PHROG	phrog_2412	NA	unknown function
UHGV-0042713_35	UniRef90	UniRef90_A0A380K8U5	NA	NA
UHGV-0042713_35	eggNOG-mapper	665942.HMPREF1022_00138	NA	NA
UHGV-0042713_36	PHROG	phrog_5902	NA	unknown function
UHGV-0042713_36	UniRef90	UniRef90_UPI001C01FE26	terminase	NA
UHGV-0042713_36	eggNOG-mapper	665942.HMPREF1022_00139	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0042713_36	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0042713_36	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0042713_37	UniRef90	UniRef90_UPI0001E12D4C	GNAT family N-acetyltransferase	NA
UHGV-0042713_37	eggNOG-mapper	665942.HMPREF1022_00140	NA	NA
UHGV-0042713_38	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0042713_38	UniRef90	UniRef90_UPI0001E12D4B	portal protein	NA
UHGV-0042713_38	eggNOG-mapper	665942.HMPREF1022_00141	Bacteriophage head to tail connecting protein	NA
UHGV-0042713_38	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0042713_38	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0042713_40	PHROG	phrog_458	protease	other
UHGV-0042713_40	UniRef90	UniRef90_A0A6F8VD24	Phage endoprotease	NA
UHGV-0042713_40	eggNOG-mapper	665942.HMPREF1022_00143	NA	NA
UHGV-0042713_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-0042713_41	UniRef90	UniRef90_A0A6J5P2C9	Major capsid protein	NA
UHGV-0042713_41	eggNOG-mapper	665942.HMPREF1022_00144	NA	NA
UHGV-0042713_41	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0042713_41	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0042713_42	eggNOG-mapper	665942.HMPREF1022_00145	NA	NA
UHGV-0042713_42	Pfam	PF21190	Bbp16	Bbp16
UHGV-0042713_42	Structural annotation	PF21190	NA	NA
UHGV-0042713_43	PHROG	phrog_394	tail protein	tail
UHGV-0042713_43	eggNOG-mapper	665942.HMPREF1022_00146	NA	NA
UHGV-0042713_43	Structural annotation	PF17212	NA	NA
UHGV-0042713_44	PHROG	phrog_1640	tail protein	tail
UHGV-0042713_44	eggNOG-mapper	665942.HMPREF1022_00147	NA	NA
UHGV-0042713_45	UniRef90	UniRef90_A0A0X8JK75	Phage tail protein	NA
UHGV-0042713_45	eggNOG-mapper	665942.HMPREF1022_00148	NA	NA
UHGV-0042713_45	Structural annotation	PF16778	NA	NA
UHGV-0042713_46	PHROG	phrog_376	tail protein	tail
UHGV-0042713_46	UniRef90	UniRef90_H8FP71	Bbp13	NA
UHGV-0042713_46	eggNOG-mapper	665942.HMPREF1022_00149	NA	NA
UHGV-0042713_46	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0042713_47	UniRef90	UniRef90_UPI0001E12C04	GNAT family N-acetyltransferase	NA
UHGV-0042713_47	eggNOG-mapper	665942.HMPREF1022_00150	NA	NA
UHGV-0042713_47	Structural annotation	PF00583, MF_02210, NF007530, COG0456	NA	NA
UHGV-0042713_48	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0042713_48	eggNOG-mapper	665942.HMPREF1022_00151	NA	NA
UHGV-0042713_48	Structural annotation	PF07321, NF041271	NA	NA
UHGV-0042713_49	eggNOG-mapper	665942.HMPREF1022_00152	NA	NA
UHGV-0042713_50	UniRef90	UniRef90_G1UNI0	LPD3 domain-containing protein	NA
UHGV-0042713_50	eggNOG-mapper	665942.HMPREF1022_00153	methylase	NA
UHGV-0042713_50	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0042713_50	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0042713_51	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0042713_51	UniRef90	UniRef90_A0A345BQW7	Structural protein	NA
UHGV-0042713_51	eggNOG-mapper	665942.HMPREF1022_00154	NA	NA
UHGV-0042713_56	UniRef90	UniRef90_UPI001D0ADCD9	Rha family transcriptional regulator	NA
UHGV-0042713_56	eggNOG-mapper	665942.HMPREF1022_00158	NA	NA
UHGV-0042713_56	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0042713_57	PHROG	phrog_2127	anti-repressor	transcription regulation
UHGV-0042713_57	UniRef90	UniRef90_G1UNI6	Bro-N domain-containing protein	NA
UHGV-0042713_57	eggNOG-mapper	665942.HMPREF1022_00159	ORF6C domain	NA
UHGV-0042713_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0042713_57	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0042713_57	COG	COG3617	Prophage antirepressor	NA
UHGV-0042713_57	Structural annotation	PF10547, NF033622, COG3617	NA	NA
UHGV-0042713_59	UniRef90	UniRef90_G1UNI7	HNHc domain-containing protein	NA
UHGV-0042713_59	eggNOG-mapper	665942.HMPREF1022_00160	HNH nucleases	NA
UHGV-0042713_59	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0042713_60	UniRef90	UniRef90_UPI000556A5B4	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0042713_60	eggNOG-mapper	290317.Cpha266_1441	mRNA binding	NA
UHGV-0042713_60	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0042713_60	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0042713_61	UniRef90	UniRef90_UPI000AC3D3A7	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0042713_61	eggNOG-mapper	665942.HMPREF1022_00161	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0042713_61	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA