UHGV-0046876

Genome information

Genome length 36,262 bps

CDS count 54

Completeness 97.27% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0046876
vOTU ID	vOTU-075220
vOTU representative	Yes
Source dataset	GPD
Original genome ID	ivig_2780
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.57
Jumbo phage	No

Genome content
Genome length	36,262 bps
GC content	38.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.67%
Average CDS length	618.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0046876_1	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046876_1	UniRef90	UniRef90_F3AAN4	AP2/ERF domain-containing protein	NA
UHGV-0046876_1	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0046876_1	Pfam	PF00847	AP2 domain	AP2
UHGV-0046876_1	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-0046876_2	Structural annotation	PF20795	NA	NA
UHGV-0046876_3	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0046876_3	UniRef90	UniRef90_UPI00129DE9D4	Arc family DNA-binding protein	NA
UHGV-0046876_3	eggNOG-mapper	1160721.RBI_I00482	NA	NA
UHGV-0046876_3	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0046876_5	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0046876_5	PHROG	phrog_7854	endolysin	lysis
UHGV-0046876_5	UniRef90	UniRef90_UPI001C3B2E98	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0046876_5	eggNOG-mapper	1235798.C817_04599	Ami_2	NA
UHGV-0046876_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0046876_5	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0046876_5	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0046876_6	PHROG	phrog_1048	NA	unknown function
UHGV-0046876_6	UniRef90	UniRef90_UPI001D055B23	NA	NA
UHGV-0046876_6	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0046876_6	Pfam	PF11195	NA	DUF2829
UHGV-0046876_6	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0046876_6	Structural annotation	PF11195	NA	NA
UHGV-0046876_7	PHROG	phrog_443	holin	lysis
UHGV-0046876_7	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0046876_7	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0046876_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0046876_7	Structural annotation	PF16945	NA	NA
UHGV-0046876_9	PHROG	phrog_2310	NA	unknown function
UHGV-0046876_9	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-0046876_10	PHROG	phrog_16164	NA	unknown function
UHGV-0046876_10	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-0046876_10	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0046876_11	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0046876_12	PHROG	phrog_25635	NA	unknown function
UHGV-0046876_12	UniRef90	UniRef90_A0A173RZM4	Phage-related holin (Lysis protein)	NA
UHGV-0046876_12	eggNOG-mapper	411468.CLOSCI_02412	NA	NA
UHGV-0046876_12	Structural annotation	PF20747	NA	NA
UHGV-0046876_13	PHROG	phrog_538	minor tail protein	tail
UHGV-0046876_13	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0046876_13	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0046876_13	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0046876_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0046876_14	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0046876_14	eggNOG-mapper	665950.HMPREF1025_02521	NA	NA
UHGV-0046876_14	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0046876_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0046876_15	UniRef90	UniRef90_F3AAP8	PhageMin_Tail domain-containing protein	NA
UHGV-0046876_15	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0046876_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0046876_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0046876_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0046876_15	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0046876_16	PHROG	phrog_709	NA	unknown function
UHGV-0046876_16	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0046876_16	Structural annotation	PF11836	NA	NA
UHGV-0046876_17	PHROG	phrog_88	major tail protein	tail
UHGV-0046876_17	UniRef90	UniRef90_A0A2V2DCA5	Phage tail protein	NA
UHGV-0046876_17	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0046876_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0046876_17	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-0046876_18	PHROG	phrog_78	tail terminator	connector
UHGV-0046876_18	eggNOG-mapper	658655.HMPREF0988_00538	NA	NA
UHGV-0046876_18	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0046876_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0046876_19	UniRef90	UniRef90_UPI0015710B2F	HK97 gp10 family phage protein	NA
UHGV-0046876_19	eggNOG-mapper	1304866.K413DRAFT_1229	NA	NA
UHGV-0046876_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0046876_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0046876_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0046876_20	UniRef90	UniRef90_F3AAQ3	Phage head-tail adaptor	NA
UHGV-0046876_20	eggNOG-mapper	1304866.K413DRAFT_1228	head-tail adaptor	NA
UHGV-0046876_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0046876_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0046876_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0046876_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0046876_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0046876_21	UniRef90	UniRef90_A0A2V2DBC2	Phage gp6-like head-tail connector protein	NA
UHGV-0046876_21	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-0046876_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0046876_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0046876_22	PHROG	phrog_6865	NA	unknown function
UHGV-0046876_22	Structural annotation	PF01281	NA	NA
UHGV-0046876_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0046876_23	UniRef90	UniRef90_F3AAQ6	HK97 family phage major capsid protein	NA
UHGV-0046876_23	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0046876_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0046876_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0046876_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0046876_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0046876_24	KOfam	K06904	NA	NA
UHGV-0046876_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0046876_24	UniRef90	UniRef90_UPI0009F962E8	HK97 family phage prohead protease	NA
UHGV-0046876_24	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-0046876_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0046876_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0046876_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0046876_25	UniRef90	UniRef90_A0A8E3N3P1	Phage portal protein	NA
UHGV-0046876_25	eggNOG-mapper	508419.F8J160_9CAUD	Phage portal protein	NA
UHGV-0046876_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0046876_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0046876_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0046876_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0046876_26	UniRef90	UniRef90_F3AAQ9	Phage terminase	NA
UHGV-0046876_26	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0046876_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0046876_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0046876_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0046876_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0046876_27	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0046876_27	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0046876_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0046876_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0046876_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0046876_28	UniRef90	UniRef90_F3AAR1	HNHc domain-containing protein	NA
UHGV-0046876_28	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-0046876_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0046876_29	PHROG	phrog_21498	NA	unknown function
UHGV-0046876_29	UniRef90	UniRef90_F0NXT0	ParB-like nuclease	NA
UHGV-0046876_29	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0046876_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0046876_29	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0046876_30	PHROG	phrog_11237	NA	unknown function
UHGV-0046876_30	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0046876_31	PHROG	phrog_6568	NA	unknown function
UHGV-0046876_33	PHROG	phrog_15198	NA	unknown function
UHGV-0046876_33	UniRef90	UniRef90_F3AAR6	NA	NA
UHGV-0046876_33	Pfam	PF04448	NA	DUF551
UHGV-0046876_35	PHROG	phrog_8684	NA	unknown function
UHGV-0046876_35	UniRef90	UniRef90_F3AAR8	YopX domain-containing protein	NA
UHGV-0046876_35	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0046876_35	Pfam	PF09643	YopX protein	YopX
UHGV-0046876_35	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0046876_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0046876_37	PHROG	phrog_37410	NA	unknown function
UHGV-0046876_37	Structural annotation	PF08169, NF037951, COG1918	NA	NA
UHGV-0046876_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0046876_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0046876_38	UniRef90	UniRef90_F3AAS1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046876_38	eggNOG-mapper	1123311.KB904448_gene48	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0046876_38	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0046876_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0046876_38	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0046876_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0046876_38	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0046876_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0046876_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0046876_40	UniRef90	UniRef90_F3AAS3	Single-stranded DNA-binding protein	NA
UHGV-0046876_40	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0046876_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0046876_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0046876_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0046876_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0046876_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0046876_41	PHROG	phrog_7566	NA	unknown function
UHGV-0046876_41	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0046876_42	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0046876_42	UniRef90	UniRef90_F3AAS5	RNase H type-1 domain-containing protein	NA
UHGV-0046876_42	eggNOG-mapper	990073.ATHU01000002_gene4	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0046876_42	Pfam	PF00075	RNase H	RNase_H
UHGV-0046876_42	COG	COG0328	Ribonuclease HI	NA
UHGV-0046876_42	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0046876_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0046876_43	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0046876_43	Structural annotation	PF21578	NA	NA
UHGV-0046876_45	PHROG	phrog_30860	NA	unknown function
UHGV-0046876_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0046876_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0046876_50	UniRef90	UniRef90_F3AAT3	HTH cro/C1-type domain-containing protein	NA
UHGV-0046876_50	eggNOG-mapper	1235798.C817_05486	Helix-turn-helix XRE-family like proteins	NA
UHGV-0046876_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0046876_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0046876_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0046876_52	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0046876_52	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0046876_52	UniRef90	UniRef90_UPI001AE6EB03	RNA polymerase sigma factor	NA
UHGV-0046876_52	eggNOG-mapper	1227349.C170_20895	ECF sigma factor	NA
UHGV-0046876_52	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0046876_52	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0046876_52	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0046876_52	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0046876_53	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0046876_53	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0046876_53	UniRef90	UniRef90_F3AAT6	BRCT domain-containing protein	NA
UHGV-0046876_53	eggNOG-mapper	411467.BACCAP_01159	EXOIII	NA
UHGV-0046876_53	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0046876_53	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0046876_53	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0046876_53	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0046876_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0046876_54	PHROG	phrog_95	integrase	integration and excision
UHGV-0046876_54	UniRef90	UniRef90_A0A1Y3SLY0	Recombinase family protein	NA
UHGV-0046876_54	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0046876_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0046876_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-0046876_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0046876_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0046876_54	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA