UHGV-0062920

Genome information

Genome length 90,218 bps

CDS count 79

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0062920
vOTU ID	vOTU-000005
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_92839
BioSample	SAMEA2467065
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.19
Jumbo phage	No

Genome content
Genome length	90,218 bps
GC content	31.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	92.28%
Average CDS length	1,056.72 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0062920_1	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0062920_1	UniRef90	UniRef90_A0A7M1RZ98	DNA polymerase	NA
UHGV-0062920_1	eggNOG-mapper	1133022.I6NPA3_9CAUD	nucleic acid binding	NA
UHGV-0062920_2	KOfam	K21929	udg; uracil-DNA glycosylase [EC:3.2.2.27]	NA
UHGV-0062920_2	UniRef90	UniRef90_A0A8F1B696	Uracil-DNA glycosylase	NA
UHGV-0062920_2	eggNOG-mapper	1150621.SMUL_1205	Uracil-DNA glycosylase	NA
UHGV-0062920_2	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0062920_2	COG	COG1573	Uracil-DNA glycosylase	NA
UHGV-0062920_2	Structural annotation	PF03167, MF_01956, TIGR00758, COG1573	NA	NA
UHGV-0062920_3	KOfam	K21499	dda; ATP-dependent DNA helicase [EC:5.6.2.3]	NA
UHGV-0062920_3	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0062920_3	UniRef90	UniRef90_A0A8F0WCR3	Exodeoxyribonuclease ATP-dependent DNA helicase	NA
UHGV-0062920_3	eggNOG-mapper	573569.F7308_0635	PIF1-like helicase	NA
UHGV-0062920_3	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0062920_3	Pfam	PF13604	AAA domain	AAA_30
UHGV-0062920_3	Pfam	PF01443	Viral (Superfamily 1) RNA helicase	Viral_helicase1
UHGV-0062920_3	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0062920_3	Structural annotation	PF05203, PF13604, MF_01488, MF_01420, NF005852, TIGR01448, COG0507, COG1372	NA	NA
UHGV-0062920_6	Structural annotation	PF18350, MF_00369, NF011236, COG2139	NA	NA
UHGV-0062920_7	UniRef90	UniRef90_A0A8F0WCT4	Putative preprotein translocase (YajC subunit)	NA
UHGV-0062920_7	Structural annotation	PF18337, MF_01549, TIGR02097, COG4873	NA	NA
UHGV-0062920_14	Structural annotation	PF17600	NA	NA
UHGV-0062920_16	Structural annotation	PF11177	NA	NA
UHGV-0062920_17	Structural annotation	PF17888, COG4687	NA	NA
UHGV-0062920_18	UniRef90	UniRef90_A0A8F0WCQ8	SH3 domain protein	NA
UHGV-0062920_20	UniRef90	UniRef90_A0A8F0WCU4	Putative Zn resistance-associated protein, putative lipopolysaccharide assembly protein	NA
UHGV-0062920_21	UniRef90	UniRef90_A0A8F1B5L7	Proteasome subunit-like protein	NA
UHGV-0062920_24	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0062920_24	UniRef90	UniRef90_A0A7M1RX50	DNA replication, ATP-dependent helicase	NA
UHGV-0062920_24	Structural annotation	PF10926, MF_03030, TIGR00372, COG4343	NA	NA
UHGV-0062920_26	PHROG	phrog_3000	NA	unknown function
UHGV-0062920_26	eggNOG-mapper	1307437.J139_20217	Peptidoglycan-binding domain 1 protein	NA
UHGV-0062920_26	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0062920_28	UniRef90	UniRef90_A0A8F0WCN7	EIAV coat protein-like protein	NA
UHGV-0062920_30	PHROG	phrog_6681	terminase large subunit	head and packaging
UHGV-0062920_30	UniRef90	UniRef90_A0A8F0WD39	Terminase	NA
UHGV-0062920_30	Structural annotation	PF03237, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0062920_31	PHROG	phrog_6547	portal protein	head and packaging
UHGV-0062920_31	UniRef90	UniRef90_A0A8F0WD06	Phage portal protein	NA
UHGV-0062920_31	Structural annotation	PF16510, MF_04120, TIGR01542, COG5518	NA	NA
UHGV-0062920_33	PHROG	phrog_11589	major head protein	head and packaging
UHGV-0062920_33	UniRef90	UniRef90_A0A8F0WCV6	Major capsid protein	NA
UHGV-0062920_33	Structural annotation	PF17236, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0062920_35	Structural annotation	PF20387	NA	NA
UHGV-0062920_38	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-0062920_38	eggNOG-mapper	1121286.AUMT01000001_gene63	NA	NA
UHGV-0062920_39	UniRef90	UniRef90_A0A8F1B680	Putative outer capsid protein tail needle protein	NA
UHGV-0062920_41	UniRef90	UniRef90_A0A8F0WCN6	Putative human gut microbiome secreted protein	NA
UHGV-0062920_41	eggNOG-mapper	411901.BACCAC_01126	Putative binding domain, N-terminal	NA
UHGV-0062920_41	Pfam	PF13004	Putative binding domain, N-terminal	BACON
UHGV-0062920_41	Structural annotation	PF14874, NF041740, COG5513	NA	NA
UHGV-0062920_42	UniRef90	UniRef90_A0A843FUP4	Ig-like domain-containing protein	NA
UHGV-0062920_42	eggNOG-mapper	742725.HMPREF9450_00894	NA	NA
UHGV-0062920_42	Structural annotation	PF02010, PF03921	NA	NA
UHGV-0062920_49	UniRef90	UniRef90_A0A8F0WCE8	ATPase proteolipid family, phage shock protein B	NA
UHGV-0062920_49	Structural annotation	PF11031, MF_04104, NF038250, COG2203	NA	NA
UHGV-0062920_50	Structural annotation	PF20387	NA	NA
UHGV-0062920_52	Structural annotation	PF20387	NA	NA
UHGV-0062920_53	Structural annotation	PF11134, TIGR02658, COG3386	NA	NA
UHGV-0062920_54	UniRef90	UniRef90_A0A8F0WCQ3	Putative endolysin/lysozyme	NA
UHGV-0062920_57	UniRef90	UniRef90_A0A8F0WE83	Transcriptional regulator	NA
UHGV-0062920_59	PHROG	phrog_9467	NA	unknown function
UHGV-0062920_59	UniRef90	UniRef90_A0A8F0WCX8	NA	NA
UHGV-0062920_59	eggNOG-mapper	1415774.U728_724	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0062920_59	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0062920_59	dbAPIS	APIS043	NA	NA
UHGV-0062920_59	Structural annotation	PF13876	NA	NA
UHGV-0062920_60	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0062920_60	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0062920_60	UniRef90	UniRef90_A0A8F1B6F7	Deoxyuridine 5-triphosphate nucleotidohydrolase	NA
UHGV-0062920_60	eggNOG-mapper	552525.B5LPN4_9CAUD	dUTPase	NA
UHGV-0062920_60	Pfam	PF00692	dUTPase	dUTPase
UHGV-0062920_60	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0062920_62	PHROG	phrog_1221	NA	unknown function
UHGV-0062920_62	UniRef90	UniRef90_UPI001C5B9A3C	NA	NA
UHGV-0062920_62	eggNOG-mapper	1121897.AUGO01000005_gene190	Alpha beta hydrolase	NA
UHGV-0062920_62	Pfam	PF06067	NA	DUF932
UHGV-0062920_62	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0062920_62	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0062920_64	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0062920_64	UniRef90	UniRef90_A0A8F1B622	Siphovirus Gp157-like/bacteriophage Mu Gam-like putative host-nuclease inhibitor protein Gam	NA
UHGV-0062920_64	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0062920_64	Structural annotation	PF11363	NA	NA
UHGV-0062920_65	PHROG	phrog_139	deoxynucleoside monophosphate kinase	other
UHGV-0062920_65	UniRef90	UniRef90_A0A8F1B690	Putative deoxynucleoside monophosphate kinase, phosphomevalonate kinase, adenylate kinase	NA
UHGV-0062920_65	Pfam	PF04275	Phosphomevalonate kinase	P-mevalo_kinase
UHGV-0062920_65	Structural annotation	PF21448, MF_00376, TIGR01223, COG0237	NA	NA
UHGV-0062920_68	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0062920_68	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0062920_68	UniRef90	UniRef90_A0A8F0WCN9	Putative thymidylate synthase	NA
UHGV-0062920_68	eggNOG-mapper	1121403.AUCV01000001_gene965	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0062920_68	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0062920_68	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0062920_68	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0062920_70	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0062920_70	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0062920_70	UniRef90	UniRef90_A0A8F0WCS5	DNA ligase	NA
UHGV-0062920_70	eggNOG-mapper	1300005.R9RGB5_9CAUD	DNA ligase (ATP) activity	NA
UHGV-0062920_70	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0062920_70	Structural annotation	PF01068, PF00164, MF_00407, NF005796, COG1793	NA	NA
UHGV-0062920_72	PHROG	phrog_12622	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0062920_72	UniRef90	UniRef90_A0A8F0WD60	DNA primase	NA
UHGV-0062920_72	eggNOG-mapper	1123058.KB894267_gene219	Toprim domain protein	NA
UHGV-0062920_72	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0062920_72	Structural annotation	PF09664, MF_01469, TIGR00646, COG4643	NA	NA
UHGV-0062920_75	Structural annotation	TIGR01913	NA	NA
UHGV-0062920_76	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0062920_76	UniRef90	UniRef90_A0A8F0WEG2	Putative DNA-directed RNA polymerase, chromatin-remodeling complex ATPase	NA
UHGV-0062920_76	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0062920_76	Structural annotation	PF16203, PF08351, MF_01489, NF010337, COG1111	NA	NA
UHGV-0062920_79	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0062920_79	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0062920_79	UniRef90	UniRef90_A0A8F1B627	DNA polymerase	NA
UHGV-0062920_79	eggNOG-mapper	1458669.W6B0U4_9CAUD	nucleic acid binding	NA