UHGV-0067267

Genome information

Genome length 53,306 bps

CDS count 80

Completeness 64.52% (medium-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0067267
vOTU ID	vOTU-025362
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_85023
BioSample	SAMEA2338835
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	64.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.35
Jumbo phage	No

Genome content
Genome length	53,306 bps
GC content	55.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	93.22%
Average CDS length	627.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0067267_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0067267_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0067267_4	UniRef90	UniRef90_A0A073INQ6	HTH cro/C1-type domain-containing protein	NA
UHGV-0067267_4	eggNOG-mapper	2754.EH55_13060	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0067267_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0067267_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0067267_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0067267_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0067267_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0067267_11	PHROG	phrog_11269	NA	unknown function
UHGV-0067267_11	UniRef90	UniRef90_A0A073IUV0	PhageMetallopep domain-containing protein	NA
UHGV-0067267_11	eggNOG-mapper	457415.HMPREF1006_02821	NA	NA
UHGV-0067267_11	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0067267_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0067267_17	UniRef90	UniRef90_A0A073IMY9	YqaJ domain-containing protein	NA
UHGV-0067267_17	eggNOG-mapper	2754.EH55_07040	YqaJ viral recombinase family	NA
UHGV-0067267_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0067267_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0067267_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0067267_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0067267_20	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0067267_20	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0067267_20	UniRef90	UniRef90_A0A845LLG7	Recombination protein RecT	NA
UHGV-0067267_20	eggNOG-mapper	525255.HMPREF0077_0417	RecT family	NA
UHGV-0067267_20	Pfam	PF03837	RecT family	RecT
UHGV-0067267_20	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0067267_20	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0067267_21	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0067267_21	eggNOG-mapper	411464.DESPIG_01302	HNH endonuclease	NA
UHGV-0067267_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0067267_22	PHROG	phrog_10105	NA	unknown function
UHGV-0067267_22	UniRef90	UniRef90_UPI0004BA3A99	NA	NA
UHGV-0067267_22	eggNOG-mapper	2754.EH55_07025	NA	NA
UHGV-0067267_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0067267_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0067267_23	UniRef90	UniRef90_D2Z2X8	Single-stranded DNA-binding protein	NA
UHGV-0067267_23	eggNOG-mapper	469381.Dpep_0164	Single-stranded DNA-binding protein	NA
UHGV-0067267_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0067267_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0067267_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0067267_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0067267_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0067267_28	PHROG	phrog_2999	NA	unknown function
UHGV-0067267_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0067267_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0067267_32	UniRef90	UniRef90_A0A1Y4GD55	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0067267_32	eggNOG-mapper	1286093.C266_11335	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0067267_32	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0067267_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0067267_32	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0067267_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0067267_32	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0067267_33	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0067267_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0067267_33	UniRef90	UniRef90_A0A1B2I384	PAPS_reduct domain-containing protein	NA
UHGV-0067267_33	eggNOG-mapper	2754.EH55_08570	sulfate reduction	NA
UHGV-0067267_33	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0067267_33	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0067267_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0067267_33	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0067267_34	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0067267_34	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0067267_37	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0067267_37	UniRef90	UniRef90_UPI001E611622	GNAT family N-acetyltransferase	NA
UHGV-0067267_37	eggNOG-mapper	1094561.MEI_01479	NA	NA
UHGV-0067267_37	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0067267_37	Pfam	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase	PRA-PH
UHGV-0067267_42	PHROG	phrog_824	NA	unknown function
UHGV-0067267_42	UniRef90	UniRef90_A0A1Y4GFX6	VRR-NUC domain-containing protein	NA
UHGV-0067267_42	eggNOG-mapper	767434.Fraau_0982	VRR-NUC domain	NA
UHGV-0067267_42	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0067267_42	Structural annotation	PF08774	NA	NA
UHGV-0067267_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0067267_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0067267_44	UniRef90	UniRef90_A0A497A8R4	Recombinase family protein	NA
UHGV-0067267_44	eggNOG-mapper	243164.DET0155	Recombinase zinc beta ribbon domain	NA
UHGV-0067267_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0067267_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-0067267_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0067267_44	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0067267_48	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0067267_48	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0067267_48	UniRef90	UniRef90_UPI001C648338	terminase small subunit	NA
UHGV-0067267_48	eggNOG-mapper	1268072.PSAB_06050	terminase small subunit	NA
UHGV-0067267_48	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0067267_48	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0067267_50	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0067267_50	UniRef90	UniRef90_A0A7X7II02	Terminase_6C domain-containing protein	NA
UHGV-0067267_50	eggNOG-mapper	883156.HMPREF9282_00550	Terminase RNaseH-like domain	NA
UHGV-0067267_50	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0067267_50	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0067267_50	COG	COG5362	Phage terminase large subunit	NA
UHGV-0067267_51	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0067267_51	UniRef90	UniRef90_A0A7X7EMS4	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0067267_51	eggNOG-mapper	608538.HTH_0544	translation initiation factor activity	NA
UHGV-0067267_51	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0067267_51	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0067267_56	PHROG	phrog_23773	NA	unknown function
UHGV-0067267_56	eggNOG-mapper	484770.UFO1_3918	UMP catabolic process	NA
UHGV-0067267_56	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0067267_59	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0067267_59	UniRef90	UniRef90_A0A7X7EM01	N4-gp56 family major capsid protein	NA
UHGV-0067267_59	eggNOG-mapper	1121447.JONL01000007_gene1395	NA	NA
UHGV-0067267_59	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0067267_59	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0067267_61	Pfam	PF02037	SAP domain	SAP
UHGV-0067267_65	eggNOG-mapper	1123288.SOV_4c02720	NA	NA
UHGV-0067267_66	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0067267_66	UniRef90	UniRef90_A0A010YT80	NA	NA
UHGV-0067267_66	eggNOG-mapper	2754.EH55_06800	cellulase activity	NA
UHGV-0067267_66	Pfam	PF09327	NA	DUF1983
UHGV-0067267_66	COG	COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	NA
UHGV-0067267_69	PHROG	phrog_1084	NA	unknown function
UHGV-0067267_70	PHROG	phrog_972	tail fiber protein proximal subunit	tail
UHGV-0067267_70	eggNOG-mapper	1235800.C819_00472	NA	NA
UHGV-0067267_70	Pfam	PF19789	NA	DUF6273
UHGV-0067267_71	eggNOG-mapper	665950.HMPREF1025_01558	NA	NA
UHGV-0067267_71	Structural annotation	PF05635, TIGR02436	NA	NA
UHGV-0067267_72	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0067267_72	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0067267_72	UniRef90	UniRef90_A0A509ENF1	Reverse transcriptase	NA
UHGV-0067267_72	eggNOG-mapper	1410650.JHWL01000003_gene2820	Reverse transcriptase	NA
UHGV-0067267_72	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0067267_72	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0067267_72	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0067267_72	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0067267_73	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0067267_73	PHROG	phrog_315	endolysin	lysis
UHGV-0067267_73	UniRef90	UniRef90_A0A1Y4GG13	PG_binding_3 domain-containing protein	NA
UHGV-0067267_73	eggNOG-mapper	469381.Dpep_2452	Predicted Peptidoglycan domain	NA
UHGV-0067267_73	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0067267_73	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0067267_73	COG	COG3926	Lysozyme family protein	NA
UHGV-0067267_73	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0067267_75	PHROG	phrog_3427	holin	lysis
UHGV-0067267_75	UniRef90	UniRef90_UPI0004B141F7	3TM-type holin	NA
UHGV-0067267_75	eggNOG-mapper	1201293.AKXQ01000048_gene1286	Holin of 3TMs, for gene-transfer release	NA
UHGV-0067267_75	Pfam	PF11351	Holin of 3TMs, for gene-transfer release	GTA_holin_3TM
UHGV-0067267_80	PHROG	phrog_5143	NA	unknown function
UHGV-0067267_80	eggNOG-mapper	421052.F945_01943	lytic transglycosylase activity	NA
UHGV-0067267_80	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0067267_80	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA