UHGV-0080454

Genome information

Genome length 44,249 bps

CDS count 72

Completeness 92.61% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080454
vOTU ID	vOTU-076347
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_164736
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.41
Jumbo phage	No

Genome content
Genome length	44,249 bps
GC content	41.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	93.29%
Average CDS length	575.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080454_2	KOfam	K21498	higA-1; antitoxin HigA-1	NA
UHGV-0080454_2	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0080454_2	UniRef90	UniRef90_A0A1G4S278	Addiction module antidote protein, HigA family	NA
UHGV-0080454_2	eggNOG-mapper	411469.EUBHAL_00045	antidote protein	NA
UHGV-0080454_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080454_2	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0080454_3	eggNOG-mapper	373903.Hore_18550	Peptidoglycan-binding domain 1 protein	NA
UHGV-0080454_3	COG	COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	NA
UHGV-0080454_3	Structural annotation	PF03734, NF007563, COG1376	NA	NA
UHGV-0080454_5	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0080454_5	eggNOG-mapper	1009370.ALO_09224	Bacteriophage holin family	NA
UHGV-0080454_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0080454_7	PHROG	phrog_2837	tail protein	tail
UHGV-0080454_7	UniRef90	UniRef90_UPI001032F78F	NA	NA
UHGV-0080454_7	eggNOG-mapper	1009370.ALO_04638	NA	NA
UHGV-0080454_7	Pfam	PF14301	NA	DUF4376
UHGV-0080454_7	Structural annotation	PF14301	NA	NA
UHGV-0080454_9	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0080454_9	PHROG	phrog_819	tail protein	tail
UHGV-0080454_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0080454_11	PHROG	phrog_7940	NA	unknown function
UHGV-0080454_11	UniRef90	UniRef90_A0A316S9G6	Toxin Bro	NA
UHGV-0080454_11	eggNOG-mapper	546271.Selsp_1341	BRO family, N-terminal domain	NA
UHGV-0080454_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0080454_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0080454_11	Structural annotation	PF10543	NA	NA
UHGV-0080454_13	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080454_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080454_13	UniRef90	UniRef90_A0A412X6X2	XRE family transcriptional regulator	NA
UHGV-0080454_13	eggNOG-mapper	1378168.N510_02065	sequence-specific DNA binding	NA
UHGV-0080454_13	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0080454_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080454_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080454_14	UniRef90	UniRef90_UPI001C3783F9	YHYH domain-containing protein	NA
UHGV-0080454_14	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0080454_14	COG	COG0103	Ribosomal protein S9	NA
UHGV-0080454_15	PHROG	phrog_9880	NA	unknown function
UHGV-0080454_15	UniRef90	UniRef90_A0A7X2XH87	MuF_C domain-containing protein	NA
UHGV-0080454_15	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0080454_15	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0080454_18	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0080454_19	PHROG	phrog_376	tail protein	tail
UHGV-0080454_19	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0080454_19	Structural annotation	PF04053, PF13157, MF_03056, NF038015, COG2706	NA	NA
UHGV-0080454_20	PHROG	phrog_376	tail protein	tail
UHGV-0080454_20	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-0080454_21	PHROG	phrog_394	tail protein	tail
UHGV-0080454_21	eggNOG-mapper	883080.HMPREF9697_04026	NA	NA
UHGV-0080454_21	Structural annotation	PF17212	NA	NA
UHGV-0080454_24	PHROG	phrog_212	major head protein	head and packaging
UHGV-0080454_24	UniRef90	UniRef90_A0A0M3F638	NA	NA
UHGV-0080454_24	eggNOG-mapper	82995.CR62_16685	NA	NA
UHGV-0080454_24	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0080454_24	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080454_26	PHROG	phrog_528	NA	unknown function
UHGV-0080454_27	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0080454_27	UniRef90	UniRef90_UPI0010329B07	portal protein	NA
UHGV-0080454_27	eggNOG-mapper	1072685.IX83_07100	Bacteriophage head to tail connecting protein	NA
UHGV-0080454_27	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0080454_27	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0080454_29	PHROG	phrog_5902	NA	unknown function
UHGV-0080454_29	UniRef90	UniRef90_UPI001032D579	terminase	NA
UHGV-0080454_29	eggNOG-mapper	1485543.JMME01000020_gene792	Terminase RNaseH-like domain	NA
UHGV-0080454_29	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0080454_29	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080454_30	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0080454_30	UniRef90	UniRef90_A0A7X3BWM5	Helix-turn-helix domain-containing protein	NA
UHGV-0080454_30	eggNOG-mapper	698769.JFBD01000002_gene2747	transposase activity	NA
UHGV-0080454_30	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0080454_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0080454_30	Structural annotation	PF07141	NA	NA
UHGV-0080454_32	PHROG	phrog_419	NA	unknown function
UHGV-0080454_32	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0080454_32	eggNOG-mapper	476272.RUMHYD_01760	NA	NA
UHGV-0080454_32	Structural annotation	PF14083	NA	NA
UHGV-0080454_33	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0080454_33	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0080454_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080454_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080454_35	UniRef90	UniRef90_UPI000F0C363F	single-stranded DNA-binding protein	NA
UHGV-0080454_35	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0080454_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080454_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080454_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080454_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080454_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0080454_41	PHROG	phrog_8538	NA	unknown function
UHGV-0080454_41	eggNOG-mapper	1009370.ALO_12631	NA	NA
UHGV-0080454_42	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080454_42	UniRef90	UniRef90_A0A7X2XHQ8	NA	NA
UHGV-0080454_42	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0080454_42	Pfam	PF06356	NA	DUF1064
UHGV-0080454_42	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0080454_44	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0080454_44	UniRef90	UniRef90_A0A2A4H9K2	SAM-dependent methyltransferase	NA
UHGV-0080454_44	eggNOG-mapper	2754.EH55_06965	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0080454_44	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0080454_44	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0080454_44	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0080454_45	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0080454_45	eggNOG-mapper	457424.BFAG_02406	radical SAM domain protein	NA
UHGV-0080454_45	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0080454_47	PHROG	phrog_7964	NA	unknown function
UHGV-0080454_47	UniRef90	UniRef90_UPI00103291C8	polymer-forming cytoskeletal protein	NA
UHGV-0080454_47	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0080454_47	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0080454_47	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0080454_47	Structural annotation	NF040481, COG2171	NA	NA
UHGV-0080454_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0080454_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0080454_49	UniRef90	UniRef90_A0A7X3BWY1	DNA helicase	NA
UHGV-0080454_49	eggNOG-mapper	1485543.JMME01000021_gene800	DnaB-like helicase N terminal domain	NA
UHGV-0080454_49	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0080454_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0080454_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0080454_50	PHROG	phrog_11769	NA	unknown function
UHGV-0080454_50	UniRef90	UniRef90_A0A7X3BW49	DnaD domain protein	NA
UHGV-0080454_50	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0080454_50	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0080454_50	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0080454_50	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0080454_51	PHROG	phrog_7566	NA	unknown function
UHGV-0080454_51	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0080454_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0080454_52	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0080454_52	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0080454_54	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080454_54	UniRef90	UniRef90_UPI001402D75D	ERF family protein	NA
UHGV-0080454_54	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0080454_54	Pfam	PF04404	ERF superfamily	ERF
UHGV-0080454_54	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0080454_59	PHROG	phrog_7338	NA	unknown function
UHGV-0080454_59	UniRef90	UniRef90_A0A1G6KQV8	DNA binding domain-containing protein, excisionase family	NA
UHGV-0080454_59	eggNOG-mapper	273068.TTE2123	Excisionase from transposon Tn916	NA
UHGV-0080454_59	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0080454_63	UniRef90	UniRef90_U7UK22	Ribbon-helix-helix protein, CopG family	NA
UHGV-0080454_63	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0080454_64	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0080454_64	UniRef90	UniRef90_UPI001032BCDE	Rha family transcriptional regulator	NA
UHGV-0080454_64	eggNOG-mapper	1089548.KI783301_gene2640	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0080454_64	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0080454_64	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0080454_64	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0080454_64	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0080454_65	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0080454_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080454_65	UniRef90	UniRef90_UPI0010FD1F0E	helix-turn-helix transcriptional regulator	NA
UHGV-0080454_65	eggNOG-mapper	997350.HMPREF9129_1690	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080454_65	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0080454_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080454_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0080454_65	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0080454_66	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080454_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080454_66	UniRef90	UniRef90_UPI00047E223F	helix-turn-helix domain-containing protein	NA
UHGV-0080454_66	eggNOG-mapper	340099.Teth39_0032	PFAM helix-turn-helix domain protein	NA
UHGV-0080454_66	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0080454_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080454_66	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0080454_66	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080454_67	Structural annotation	PF06114	NA	NA
UHGV-0080454_69	eggNOG-mapper	1005994.GTGU_01419	NA	NA
UHGV-0080454_70	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0080454_70	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0080454_70	UniRef90	UniRef90_UPI000F8EB2AD	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0080454_70	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0080454_70	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0080454_70	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0080454_70	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0080454_71	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0080454_71	UniRef90	UniRef90_UPI0003FD2D49	KilA-N domain-containing protein	NA
UHGV-0080454_71	eggNOG-mapper	653733.Selin_1708	AntA/AntB antirepressor	NA
UHGV-0080454_71	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0080454_71	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0080454_71	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0080454_72	KOfam	K14059	int; integrase	NA
UHGV-0080454_72	PHROG	phrog_1	integrase	integration and excision
UHGV-0080454_72	UniRef90	UniRef90_G9YK08	Site-specific recombinase, phage integrase family	NA
UHGV-0080454_72	eggNOG-mapper	861450.HMPREF0080_02017	Belongs to the 'phage' integrase family	NA
UHGV-0080454_72	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0080454_72	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080454_72	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080454_72	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA