UHGV-0164884

Genome information

Genome length 41,262 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9647

Prediction confidence Confident

Genome information
Genome ID	UHGV-0164884
vOTU ID	vOTU-000140
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_549876
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9647
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.05
Jumbo phage	No

Genome content
Genome length	41,262 bps
GC content	40.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	95.16%
Average CDS length	550.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164884_1	PHROG	phrog_16348	NA	unknown function
UHGV-0164884_1	Pfam	PF00754	F5/8 type C domain	F5_F8_type_C
UHGV-0164884_1	Structural annotation	PF06588, MF_00813, TIGR02961, COG5156	NA	NA
UHGV-0164884_3	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0164884_4	PHROG	phrog_17334	NA	unknown function
UHGV-0164884_4	eggNOG-mapper	189425.PGRAT_17530	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0164884_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0164884_6	PHROG	phrog_521	tail protein	tail
UHGV-0164884_6	UniRef90	UniRef90_UPI000E49DC06	NA	NA
UHGV-0164884_6	eggNOG-mapper	1567013.A0A0A7RTT8_9CAUD	NA	NA
UHGV-0164884_6	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0164884_6	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0164884_7	PHROG	phrog_6	baseplate protein	tail
UHGV-0164884_7	UniRef90	UniRef90_A0A1V5X8C8	Baseplate J-like protein	NA
UHGV-0164884_7	eggNOG-mapper	290402.Cbei_0923	Baseplate J-like protein	NA
UHGV-0164884_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0164884_7	COG	COG3299	NA	NA
UHGV-0164884_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0164884_8	PHROG	phrog_120	baseplate protein	tail
UHGV-0164884_8	UniRef90	UniRef90_A0A3A9BQU9	NA	NA
UHGV-0164884_8	eggNOG-mapper	552398.HMPREF0866_03102	NA	NA
UHGV-0164884_8	Pfam	PF10934	NA	DUF2634
UHGV-0164884_8	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0164884_10	PHROG	phrog_400	tail protein	tail
UHGV-0164884_10	UniRef90	UniRef90_K5A4A5	Phage late control protein D	NA
UHGV-0164884_10	eggNOG-mapper	1111454.HMPREF1250_0196	NLP P60 protein	NA
UHGV-0164884_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0164884_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0164884_11	PHROG	phrog_380	endolysin	lysis
UHGV-0164884_11	UniRef90	UniRef90_A0A3D0LZE8	LysM domain-containing protein	NA
UHGV-0164884_11	eggNOG-mapper	665950.HMPREF1025_01343	LysM domain	NA
UHGV-0164884_11	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0164884_11	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0164884_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0164884_12	UniRef90	UniRef90_UPI000489CAC1	tape measure protein	NA
UHGV-0164884_12	eggNOG-mapper	945713.IALB_0073	tape measure	NA
UHGV-0164884_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0164884_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0164884_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0164884_14	PHROG	phrog_365	tail protein	tail
UHGV-0164884_14	UniRef90	UniRef90_UPI001F273D11	phage tail tube protein	NA
UHGV-0164884_14	eggNOG-mapper	469604.HMPREF0946_01081	Phage tail tube protein	NA
UHGV-0164884_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0164884_14	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0164884_15	PHROG	phrog_1480	tail sheath	tail
UHGV-0164884_15	UniRef90	UniRef90_A0A1C6CKB7	Phage tail sheath protein	NA
UHGV-0164884_15	eggNOG-mapper	445972.ANACOL_00544	Phage tail sheath C-terminal domain	NA
UHGV-0164884_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0164884_15	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0164884_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164884_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0164884_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0164884_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0164884_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0164884_22	UniRef90	UniRef90_R7FBE8	Phage major capsid protein	NA
UHGV-0164884_22	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0164884_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0164884_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0164884_23	Pfam	PF14265	NA	DUF4355
UHGV-0164884_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0164884_24	UniRef90	UniRef90_A0A847VUK7	Minor capsid protein (Fragment)	NA
UHGV-0164884_24	eggNOG-mapper	469604.HMPREF0946_01091	Phage Mu protein F like protein	NA
UHGV-0164884_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0164884_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0164884_24	COG	COG2369	NA	NA
UHGV-0164884_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0164884_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164884_25	UniRef90	UniRef90_A0A1W1X006	Phage portal protein, SPP1 family	NA
UHGV-0164884_25	eggNOG-mapper	562981.HMPREF0428_01823	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164884_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164884_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0164884_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0164884_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164884_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0164884_26	UniRef90	UniRef90_A0A6I1BJB4	PBSX family phage terminase large subunit	NA
UHGV-0164884_26	eggNOG-mapper	1035196.HMPREF9998_01724	Terminase-like family	NA
UHGV-0164884_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164884_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0164884_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164884_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164884_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0164884_27	PHROG	phrog_2412	NA	unknown function
UHGV-0164884_27	eggNOG-mapper	1203554.HMPREF1476_00247	NA	NA
UHGV-0164884_28	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0164884_28	UniRef90	UniRef90_A0A822UCQ7	ParB-like nuclease	NA
UHGV-0164884_28	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0164884_28	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0164884_28	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0164884_29	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0164884_29	UniRef90	UniRef90_A0A2E8DGT3	DNA methylase	NA
UHGV-0164884_29	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0164884_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0164884_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0164884_29	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0164884_33	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164884_33	UniRef90	UniRef90_A0A7Y5VVN2	VRR-NUC domain-containing protein	NA
UHGV-0164884_33	eggNOG-mapper	1423732.BALS01000058_gene2829	VRR_NUC	NA
UHGV-0164884_38	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0164884_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0164884_38	UniRef90	UniRef90_A0A7Y5HHV9	DEAD/DEAH box helicase	NA
UHGV-0164884_38	eggNOG-mapper	1140.Synpcc7942_0725	Helicase conserved C-terminal domain	NA
UHGV-0164884_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0164884_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0164884_38	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0164884_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0164884_38	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0164884_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0164884_40	UniRef90	UniRef90_A0A7S8C5Z2	PD-(D/E)XK nuclease family protein	NA
UHGV-0164884_40	eggNOG-mapper	640081.Dsui_0178	PD-(D/E)XK nuclease superfamily	NA
UHGV-0164884_40	COG	COG2887	RecB family exonuclease	NA
UHGV-0164884_40	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0164884_41	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164884_41	UniRef90	UniRef90_UPI001CFF66D8	recombinase RecT	NA
UHGV-0164884_41	eggNOG-mapper	1140.Synpcc7942_0722	NA	NA
UHGV-0164884_41	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0164884_42	UniRef90	UniRef90_A0A351VEV6	AAA_23 domain-containing protein	NA
UHGV-0164884_42	eggNOG-mapper	1192124.LIG30_2095	AAA domain	NA
UHGV-0164884_42	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0164884_42	Structural annotation	PF13166, MF_00449, NF002244, COG0419	NA	NA
UHGV-0164884_43	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0164884_47	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0164884_47	UniRef90	UniRef90_A0A7X5DCK0	LPD15 domain-containing protein	NA
UHGV-0164884_47	eggNOG-mapper	445972.ANACOL_01830	NA	NA
UHGV-0164884_47	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0164884_49	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0164884_49	UniRef90	UniRef90_A0A349Q001	Conjugal transfer protein	NA
UHGV-0164884_49	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0164884_49	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0164884_49	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0164884_52	PHROG	phrog_98	NA	unknown function
UHGV-0164884_52	UniRef90	UniRef90_A0A843HVE9	YopX domain-containing protein	NA
UHGV-0164884_52	eggNOG-mapper	46256.BBIK01000004_gene676	YopX protein	NA
UHGV-0164884_52	Pfam	PF09643	YopX protein	YopX
UHGV-0164884_52	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0164884_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0164884_53	Structural annotation	PF09871, MF_01549, NF004670, COG4014	NA	NA
UHGV-0164884_55	Structural annotation	PF11195	NA	NA
UHGV-0164884_57	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0164884_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0164884_59	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0164884_59	UniRef90	UniRef90_A0A843HU00	RNase H type-1 domain-containing protein	NA
UHGV-0164884_59	Pfam	PF00075	RNase H	RNase_H
UHGV-0164884_62	PHROG	phrog_7	endolysin	lysis
UHGV-0164884_62	UniRef90	UniRef90_A0A1Q6T4A9	Lysozyme	NA
UHGV-0164884_62	eggNOG-mapper	305900.GV64_11145	lysozyme	NA
UHGV-0164884_62	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0164884_62	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0164884_64	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA