vOTU-000140

Overview

No. of genomes 91

Genome length 41,262 bps

Completeness 100.00% (complete)

Host CAG-239

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-000140
Number of genomes	91
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00178 › vSUBFAM-04926 › vGENUS-09566 › vSUBGEN-11436 › vOTU-000140
Host taxonomy	Bacteria › Proteobacteria › Alphaproteobacteria › RF32 › CAG-239
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0164884
BioSample	NA
Genome length	41,262 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	72
CDS density	95.16%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0164884_1	PHROG	phrog_16348	NA	unknown function
UHGV-0164884_1	Pfam	PF00754	F5/8 type C domain	F5_F8_type_C
UHGV-0164884_1	Structural annotation	PF06588, MF_00813, TIGR02961, COG5156	NA	NA
UHGV-0164884_3	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0164884_4	PHROG	phrog_17334	NA	unknown function
UHGV-0164884_4	eggNOG-mapper	189425.PGRAT_17530	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0164884_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0164884_6	PHROG	phrog_521	tail protein	tail
UHGV-0164884_6	UniRef90	UniRef90_UPI000E49DC06	NA	NA
UHGV-0164884_6	eggNOG-mapper	1567013.A0A0A7RTT8_9CAUD	NA	NA
UHGV-0164884_6	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0164884_6	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0164884_7	PHROG	phrog_6	baseplate protein	tail
UHGV-0164884_7	UniRef90	UniRef90_A0A1V5X8C8	Baseplate J-like protein	NA
UHGV-0164884_7	eggNOG-mapper	290402.Cbei_0923	Baseplate J-like protein	NA
UHGV-0164884_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0164884_7	COG	COG3299	NA	NA
UHGV-0164884_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0164884_8	PHROG	phrog_120	baseplate protein	tail
UHGV-0164884_8	UniRef90	UniRef90_A0A3A9BQU9	NA	NA
UHGV-0164884_8	eggNOG-mapper	552398.HMPREF0866_03102	NA	NA
UHGV-0164884_8	Pfam	PF10934	NA	DUF2634
UHGV-0164884_8	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0164884_10	PHROG	phrog_400	tail protein	tail
UHGV-0164884_10	UniRef90	UniRef90_K5A4A5	Phage late control protein D	NA
UHGV-0164884_10	eggNOG-mapper	1111454.HMPREF1250_0196	NLP P60 protein	NA
UHGV-0164884_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0164884_10	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0164884_11	PHROG	phrog_380	endolysin	lysis
UHGV-0164884_11	UniRef90	UniRef90_A0A3D0LZE8	LysM domain-containing protein	NA
UHGV-0164884_11	eggNOG-mapper	665950.HMPREF1025_01343	LysM domain	NA
UHGV-0164884_11	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0164884_11	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0164884_12	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0164884_12	UniRef90	UniRef90_UPI000489CAC1	tape measure protein	NA
UHGV-0164884_12	eggNOG-mapper	945713.IALB_0073	tape measure	NA
UHGV-0164884_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0164884_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0164884_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0164884_14	PHROG	phrog_365	tail protein	tail
UHGV-0164884_14	UniRef90	UniRef90_UPI001F273D11	phage tail tube protein	NA
UHGV-0164884_14	eggNOG-mapper	469604.HMPREF0946_01081	Phage tail tube protein	NA
UHGV-0164884_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0164884_14	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0164884_15	PHROG	phrog_1480	tail sheath	tail
UHGV-0164884_15	UniRef90	UniRef90_A0A1C6CKB7	Phage tail sheath protein	NA
UHGV-0164884_15	eggNOG-mapper	445972.ANACOL_00544	Phage tail sheath C-terminal domain	NA
UHGV-0164884_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0164884_15	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0164884_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0164884_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0164884_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0164884_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0164884_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0164884_22	UniRef90	UniRef90_R7FBE8	Phage major capsid protein	NA
UHGV-0164884_22	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-0164884_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0164884_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0164884_23	Pfam	PF14265	NA	DUF4355
UHGV-0164884_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0164884_24	UniRef90	UniRef90_A0A847VUK7	Minor capsid protein (Fragment)	NA
UHGV-0164884_24	eggNOG-mapper	469604.HMPREF0946_01091	Phage Mu protein F like protein	NA
UHGV-0164884_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0164884_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0164884_24	COG	COG2369	NA	NA
UHGV-0164884_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0164884_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0164884_25	UniRef90	UniRef90_A0A1W1X006	Phage portal protein, SPP1 family	NA
UHGV-0164884_25	eggNOG-mapper	562981.HMPREF0428_01823	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0164884_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0164884_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0164884_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0164884_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0164884_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0164884_26	UniRef90	UniRef90_A0A6I1BJB4	PBSX family phage terminase large subunit	NA
UHGV-0164884_26	eggNOG-mapper	1035196.HMPREF9998_01724	Terminase-like family	NA
UHGV-0164884_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0164884_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0164884_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0164884_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0164884_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0164884_27	PHROG	phrog_2412	NA	unknown function
UHGV-0164884_27	eggNOG-mapper	1203554.HMPREF1476_00247	NA	NA
UHGV-0164884_28	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0164884_28	UniRef90	UniRef90_A0A822UCQ7	ParB-like nuclease	NA
UHGV-0164884_28	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0164884_28	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0164884_28	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0164884_29	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0164884_29	UniRef90	UniRef90_A0A2E8DGT3	DNA methylase	NA
UHGV-0164884_29	eggNOG-mapper	411459.RUMOBE_01044	NA	NA
UHGV-0164884_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0164884_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0164884_29	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0164884_33	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0164884_33	UniRef90	UniRef90_A0A7Y5VVN2	VRR-NUC domain-containing protein	NA
UHGV-0164884_33	eggNOG-mapper	1423732.BALS01000058_gene2829	VRR_NUC	NA
UHGV-0164884_38	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0164884_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0164884_38	UniRef90	UniRef90_A0A7Y5HHV9	DEAD/DEAH box helicase	NA
UHGV-0164884_38	eggNOG-mapper	1140.Synpcc7942_0725	Helicase conserved C-terminal domain	NA
UHGV-0164884_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0164884_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0164884_38	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0164884_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0164884_38	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0164884_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0164884_40	UniRef90	UniRef90_A0A7S8C5Z2	PD-(D/E)XK nuclease family protein	NA
UHGV-0164884_40	eggNOG-mapper	640081.Dsui_0178	PD-(D/E)XK nuclease superfamily	NA
UHGV-0164884_40	COG	COG2887	RecB family exonuclease	NA
UHGV-0164884_40	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0164884_41	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0164884_41	UniRef90	UniRef90_UPI001CFF66D8	recombinase RecT	NA
UHGV-0164884_41	eggNOG-mapper	1140.Synpcc7942_0722	NA	NA
UHGV-0164884_41	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0164884_42	UniRef90	UniRef90_A0A351VEV6	AAA_23 domain-containing protein	NA
UHGV-0164884_42	eggNOG-mapper	1192124.LIG30_2095	AAA domain	NA
UHGV-0164884_42	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0164884_42	Structural annotation	PF13166, MF_00449, NF002244, COG0419	NA	NA
UHGV-0164884_43	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0164884_47	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0164884_47	UniRef90	UniRef90_A0A7X5DCK0	LPD15 domain-containing protein	NA
UHGV-0164884_47	eggNOG-mapper	445972.ANACOL_01830	NA	NA
UHGV-0164884_47	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0164884_49	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0164884_49	UniRef90	UniRef90_A0A349Q001	Conjugal transfer protein	NA
UHGV-0164884_49	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0164884_49	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0164884_49	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0164884_52	PHROG	phrog_98	NA	unknown function
UHGV-0164884_52	UniRef90	UniRef90_A0A843HVE9	YopX domain-containing protein	NA
UHGV-0164884_52	eggNOG-mapper	46256.BBIK01000004_gene676	YopX protein	NA
UHGV-0164884_52	Pfam	PF09643	YopX protein	YopX
UHGV-0164884_52	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0164884_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0164884_53	Structural annotation	PF09871, MF_01549, NF004670, COG4014	NA	NA
UHGV-0164884_55	Structural annotation	PF11195	NA	NA
UHGV-0164884_57	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0164884_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0164884_59	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0164884_59	UniRef90	UniRef90_A0A843HU00	RNase H type-1 domain-containing protein	NA
UHGV-0164884_59	Pfam	PF00075	RNase H	RNase_H
UHGV-0164884_62	PHROG	phrog_7	endolysin	lysis
UHGV-0164884_62	UniRef90	UniRef90_A0A1Q6T4A9	Lysozyme	NA
UHGV-0164884_62	eggNOG-mapper	305900.GV64_11145	lysozyme	NA
UHGV-0164884_62	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0164884_62	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0164884_64	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0164884	Yes	41,262 bps	40.30%	100.00%	0.9647
UHGV-1367951	No	41,142 bps	39.99%	100.00%	0.9566
UHGV-0280164	No	41,104 bps	40.01%	100.00%	0.9592
UHGV-0166328	No	40,562 bps	40.07%	100.00%	0.9611
UHGV-0162194	No	40,126 bps	40.06%	100.00%	0.9589
UHGV-0167306	No	40,126 bps	40.06%	100.00%	0.9598
UHGV-0167784	No	40,126 bps	40.06%	100.00%	0.9605
UHGV-0254644	No	40,126 bps	40.06%	100.00%	0.9635
UHGV-0358297	No	40,126 bps	40.06%	100.00%	0.9589
UHGV-0831897	No	40,089 bps	40.37%	100.00%	0.9601
UHGV-1362483	No	40,044 bps	40.16%	100.00%	0.9608
UHGV-0165083	No	40,039 bps	40.04%	100.00%	0.9579
UHGV-1364898	No	39,921 bps	40.23%	100.00%	0.9601
UHGV-1364249	No	39,864 bps	40.44%	100.00%	0.9571
UHGV-0165536	No	39,635 bps	40.33%	100.00%	0.9626
UHGV-0178037	No	39,635 bps	40.33%	100.00%	0.9640
UHGV-0226964	No	39,635 bps	40.33%	100.00%	0.9677
UHGV-0244194	No	39,635 bps	40.33%	100.00%	0.9672
UHGV-0310029	No	39,635 bps	40.33%	100.00%	0.9624
UHGV-0360606	No	39,635 bps	40.33%	100.00%	0.9686
UHGV-1365656	No	39,503 bps	40.45%	100.00%	0.9600
UHGV-0211129	No	39,219 bps	40.44%	100.00%	0.9661
UHGV-1367430	No	38,995 bps	40.06%	100.00%	0.9660
UHGV-0164573	No	38,515 bps	40.37%	100.00%	0.9628
UHGV-0230060	No	38,515 bps	40.36%	100.00%	0.9638
UHGV-0107204	No	37,458 bps	40.31%	100.00%	0.9648
UHGV-0382674	No	37,458 bps	40.31%	100.00%	0.9647
UHGV-0387143	No	37,458 bps	40.31%	100.00%	0.9647
UHGV-0387581	No	37,458 bps	40.32%	100.00%	0.9588
UHGV-0389573	No	37,458 bps	40.31%	100.00%	0.9647
UHGV-0392845	No	37,458 bps	40.31%	100.00%	0.9648
UHGV-1374073	No	37,458 bps	40.31%	100.00%	0.9654
UHGV-0106270	No	37,425 bps	40.30%	100.00%	0.9597
UHGV-0383031	No	37,425 bps	40.30%	100.00%	0.9597
UHGV-0389188	No	37,425 bps	40.30%	100.00%	0.9597
UHGV-1424563	No	35,836 bps	40.43%	100.00%	0.9573
UHGV-0244387	No	41,124 bps	40.26%	99.96%	0.9647
UHGV-0042748	No	41,763 bps	40.39%	99.90%	0.9636
UHGV-1429528	No	41,763 bps	40.39%	99.90%	0.9636
UHGV-0180483	No	41,267 bps	40.31%	99.90%	0.9612
UHGV-0168791	No	41,046 bps	40.39%	99.77%	0.9660
UHGV-0051171	No	41,018 bps	40.21%	99.70%	0.9654
UHGV-1382087	No	41,018 bps	40.21%	99.70%	0.9654
UHGV-1474514	No	40,876 bps	40.47%	99.35%	0.9640
UHGV-0172954	No	40,796 bps	40.29%	99.16%	0.9583
UHGV-1387350	No	40,458 bps	40.21%	98.34%	0.9594
UHGV-0042168	No	40,419 bps	40.34%	98.24%	0.9615
UHGV-1390006	No	40,419 bps	40.34%	98.24%	0.9615
UHGV-1390011	No	40,418 bps	40.34%	98.24%	0.9614
UHGV-1965012	No	40,152 bps	40.00%	97.59%	0.9563
UHGV-0065126	No	40,010 bps	40.26%	97.25%	0.9566
UHGV-1470819	No	40,010 bps	40.26%	97.25%	0.9566
UHGV-1379930	No	39,944 bps	40.22%	97.09%	0.9569
UHGV-0245378	No	39,930 bps	40.24%	97.05%	0.9583
UHGV-1470644	No	39,773 bps	40.48%	96.67%	0.9608
UHGV-1380874	No	39,607 bps	40.63%	96.27%	0.9656
UHGV-0168927	No	39,385 bps	40.49%	95.73%	0.9637
UHGV-1395843	No	38,838 bps	40.28%	94.40%	0.9609
UHGV-0055772	No	38,776 bps	40.74%	94.25%	0.9610
UHGV-1393407	No	38,776 bps	40.74%	94.25%	0.9610
UHGV-1397146	No	38,100 bps	40.57%	92.61%	0.9621
UHGV-0296285	No	37,864 bps	40.02%	92.03%	0.9544
UHGV-1441555	No	37,728 bps	40.34%	91.70%	0.9643
UHGV-0072013	No	36,592 bps	40.75%	88.94%	0.9666
UHGV-1396724	No	36,479 bps	40.32%	88.67%	0.9619
UHGV-1396687	No	36,344 bps	40.16%	88.34%	0.9562
UHGV-1425820	No	35,946 bps	40.68%	87.37%	0.9655
UHGV-0287706	No	35,133 bps	40.70%	85.39%	0.9673
UHGV-1416597	No	34,965 bps	40.64%	84.99%	0.9642
UHGV-1475047	No	31,859 bps	40.50%	77.44%	0.9698
UHGV-1472560	No	30,713 bps	40.10%	74.65%	0.9642
UHGV-1445848	No	28,001 bps	40.64%	68.06%	0.9646
UHGV-1491489	No	27,736 bps	40.95%	67.42%	0.9719
UHGV-1490579	No	27,686 bps	40.70%	67.29%	0.9599
UHGV-0139212	No	23,390 bps	39.53%	56.85%	0.9477
UHGV-1383868	No	23,323 bps	41.12%	56.69%	0.9718
UHGV-0294440	No	22,934 bps	39.15%	55.74%	0.9635
UHGV-1420428	No	22,908 bps	40.96%	55.68%	0.9711
UHGV-0140352	No	22,194 bps	40.98%	53.94%	0.9650
UHGV-1466429	No	21,411 bps	40.92%	52.04%	0.9651
UHGV-1693314	No	18,886 bps	40.85%	45.90%	0.9696
UHGV-1609608	No	18,160 bps	41.50%	44.14%	0.9745
UHGV-1687888	No	17,200 bps	40.42%	41.81%	0.9651
UHGV-1889894	No	17,025 bps	38.75%	41.38%	0.9258
UHGV-1884855	No	16,161 bps	41.61%	39.28%	0.9756
UHGV-1729915	No	15,051 bps	41.49%	36.58%	0.9775
UHGV-1653315	No	14,284 bps	41.43%	34.72%	0.9733
UHGV-1661621	No	14,265 bps	40.40%	34.67%	0.9557
UHGV-1705204	No	12,851 bps	40.57%	31.24%	0.9583
UHGV-1564302	No	11,917 bps	40.44%	28.97%	0.9686
UHGV-1779852	No	11,171 bps	41.28%	27.15%	0.9719