UHGV-0259903

Genome information

Genome length 50,099 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0259903
vOTU ID	vOTU-002797
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR2142224_99_132813_round347~1975588
BioSample	SAMN03955572
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	81.56
Jumbo phage	No

Genome content
Genome length	50,099 bps
GC content	53.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.91%
Average CDS length	686.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0259903_1	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0259903_1	UniRef90	UniRef90_A0A1L6BY46	Nucleotide-binding protein	NA
UHGV-0259903_2	PHROG	phrog_3724	NA	unknown function
UHGV-0259903_2	Pfam	PF05037	NA	DUF669
UHGV-0259903_3	UniRef90	UniRef90_A0A5H2TVW2	VRR-NUC domain-containing protein	NA
UHGV-0259903_3	eggNOG-mapper	350688.Clos_1296	pfam vrr-nuc	NA
UHGV-0259903_3	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0259903_4	PHROG	phrog_1485	NA	unknown function
UHGV-0259903_4	UniRef90	UniRef90_R6M0A1	NA	NA
UHGV-0259903_4	eggNOG-mapper	938278.CAJO01000051_gene805	NA	NA
UHGV-0259903_4	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0259903_5	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0259903_5	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0259903_5	UniRef90	UniRef90_A0A1L6BY27	Helicase	NA
UHGV-0259903_5	eggNOG-mapper	935948.KE386495_gene1203	SNF2 family N-terminal domain	NA
UHGV-0259903_5	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0259903_5	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0259903_5	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0259903_5	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0259903_5	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0259903_8	PHROG	phrog_33386	NA	unknown function
UHGV-0259903_8	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0259903_10	PHROG	phrog_13256	NA	unknown function
UHGV-0259903_10	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0259903_11	PHROG	phrog_21357	endolysin	lysis
UHGV-0259903_11	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0259903_11	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0259903_11	Pfam	PF05257	CHAP domain	CHAP
UHGV-0259903_11	COG	COG1388	LysM repeat	NA
UHGV-0259903_11	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0259903_12	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0259903_14	PHROG	phrog_1220	head protein	head and packaging
UHGV-0259903_14	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-0259903_15	PHROG	phrog_538	minor tail protein	tail
UHGV-0259903_15	UniRef90	UniRef90_UPI0006B2A1E0	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0259903_15	eggNOG-mapper	536232.CLM_2044	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0259903_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0259903_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0259903_16	PHROG	phrog_36410	NA	unknown function
UHGV-0259903_16	UniRef90	UniRef90_A0A7X9C3E1	Phage tail family protein	NA
UHGV-0259903_16	eggNOG-mapper	431943.CKL_4056	Phage tail protein	NA
UHGV-0259903_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0259903_16	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0259903_17	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0259903_17	UniRef90	UniRef90_A0A1B2DVD5	PhageMin_Tail domain-containing protein	NA
UHGV-0259903_17	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0259903_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0259903_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0259903_18	PHROG	phrog_6280	NA	unknown function
UHGV-0259903_18	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0259903_18	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0259903_19	PHROG	phrog_6686	tail tube protein	tail
UHGV-0259903_19	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0259903_19	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-0259903_19	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0259903_20	PHROG	phrog_7585	NA	unknown function
UHGV-0259903_20	eggNOG-mapper	1443122.Z958_05865	NA	NA
UHGV-0259903_20	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0259903_21	eggNOG-mapper	1304880.JAGB01000002_gene2213	NA	NA
UHGV-0259903_21	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0259903_22	PHROG	phrog_8435	NA	unknown function
UHGV-0259903_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0259903_23	PHROG	phrog_4020	NA	unknown function
UHGV-0259903_23	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0259903_24	Structural annotation	PF07498	NA	NA
UHGV-0259903_25	PHROG	phrog_29	major head protein	head and packaging
UHGV-0259903_25	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0259903_25	eggNOG-mapper	756499.Desde_1083	Phage major capsid protein E	NA
UHGV-0259903_25	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0259903_25	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0259903_26	PHROG	phrog_909	major head protein	head and packaging
UHGV-0259903_26	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0259903_26	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0259903_26	Structural annotation	PF02924	NA	NA
UHGV-0259903_27	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0259903_27	eggNOG-mapper	986075.CathTA2_2461	NA	NA
UHGV-0259903_27	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0259903_29	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0259903_29	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0259903_29	eggNOG-mapper	1121342.AUCO01000012_gene1699	NA	NA
UHGV-0259903_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0259903_29	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0259903_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0259903_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0259903_31	UniRef90	UniRef90_UPI0008331C88	phage portal protein	NA
UHGV-0259903_31	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0259903_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0259903_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0259903_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0259903_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0259903_33	UniRef90	UniRef90_UPI00101D64CF	PBSX family phage terminase large subunit	NA
UHGV-0259903_33	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0259903_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0259903_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0259903_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0259903_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0259903_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0259903_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0259903_34	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0259903_34	UniRef90	UniRef90_A0A1Y0YDW3	Terminase	NA
UHGV-0259903_34	eggNOG-mapper	279010.BL03830	phage terminase small subunit	NA
UHGV-0259903_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0259903_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0259903_34	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0259903_35	Structural annotation	MF_01387	NA	NA
UHGV-0259903_37	PHROG	phrog_6072	NA	unknown function
UHGV-0259903_38	PHROG	phrog_33402	NA	unknown function
UHGV-0259903_41	PHROG	phrog_22389	NA	unknown function
UHGV-0259903_41	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0259903_42	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0259903_42	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0259903_42	UniRef90	UniRef90_A0A523APF6	Cytidine deaminase	NA
UHGV-0259903_42	eggNOG-mapper	224325.AF_1764	PFAM CMP dCMP deaminase zinc-binding	NA
UHGV-0259903_42	PADLOC	dCTPase	NA	NA
UHGV-0259903_42	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0259903_42	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0259903_42	Structural annotation	PF00383, MF_00972, TIGR02571, COG2131	NA	NA
UHGV-0259903_47	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0259903_47	PHROG	phrog_30550	NA	unknown function
UHGV-0259903_47	UniRef90	UniRef90_UPI0018992D54	cell wall hydrolase	NA
UHGV-0259903_47	eggNOG-mapper	1449063.JMLS01000019_gene5660	Cell Wall Hydrolase	NA
UHGV-0259903_47	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0259903_47	Structural annotation	TIGR02869	NA	NA
UHGV-0259903_50	PHROG	phrog_1221	NA	unknown function
UHGV-0259903_50	UniRef90	UniRef90_A0A843GH20	NA	NA
UHGV-0259903_50	eggNOG-mapper	1235798.C817_00381	NA	NA
UHGV-0259903_50	Pfam	PF06067	NA	DUF932
UHGV-0259903_50	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-0259903_50	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-0259903_53	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0259903_53	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0259903_53	UniRef90	UniRef90_UPI001E34568B	ADP-ribosylglycohydrolase family protein	NA
UHGV-0259903_53	eggNOG-mapper	411465.PEPMIC_00852	ADP-ribosylglycohydrolase	NA
UHGV-0259903_53	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0259903_53	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0259903_53	Structural annotation	PF03747, NF041672, COG1397	NA	NA
UHGV-0259903_54	PHROG	phrog_421	NA	unknown function
UHGV-0259903_54	UniRef90	UniRef90_UPI001C8E55BC	NA	NA
UHGV-0259903_54	eggNOG-mapper	349161.Dred_0988	NA	NA
UHGV-0259903_54	Pfam	PF10979	NA	DUF2786
UHGV-0259903_54	COG	COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	NA
UHGV-0259903_54	Structural annotation	PF10979	NA	NA
UHGV-0259903_56	PHROG	phrog_5889	NA	unknown function
UHGV-0259903_56	UniRef90	UniRef90_A0A5H2TSQ8	HD domain-containing protein	NA
UHGV-0259903_56	eggNOG-mapper	1280692.AUJL01000009_gene2990	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0259903_56	Pfam	PF01966	HD domain	HD
UHGV-0259903_57	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0259903_57	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0259903_57	UniRef90	UniRef90_UPI00047D4F18	FAD-dependent thymidylate synthase	NA
UHGV-0259903_57	eggNOG-mapper	1336241.JAEB01000001_gene147	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0259903_57	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0259903_57	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0259903_57	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0259903_57	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0259903_58	PHROG	phrog_2250	NA	unknown function
UHGV-0259903_59	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0259903_59	PHROG	phrog_3123	NA	unknown function
UHGV-0259903_59	UniRef90	UniRef90_A0A316NYT9	RepB_primase domain-containing protein	NA
UHGV-0259903_59	eggNOG-mapper	304371.MCP_2164	COG0467 RecA-superfamily ATPases implicated in signal transduction	NA
UHGV-0259903_59	Pfam	PF16793	RepB DNA-primase from phage plasmid	RepB_primase
UHGV-0259903_59	Pfam	PF13481	AAA domain	AAA_25
UHGV-0259903_59	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-0259903_59	Structural annotation	PF13481, PF16793, MF_00350, TIGR00416, NF040562, COG3598	NA	NA
UHGV-0259903_60	Structural annotation	PF13521, MF_00165, TIGR00041, COG1428	NA	NA
UHGV-0259903_61	PHROG	phrog_12184	nucleotide pyrophosphohydrolase	other
UHGV-0259903_61	UniRef90	UniRef90_A0A843GTV8	dUTP diphosphatase	NA
UHGV-0259903_61	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0259903_61	Structural annotation	PF08761	NA	NA
UHGV-0259903_62	PHROG	phrog_34294	NA	unknown function
UHGV-0259903_62	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0259903_63	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0259903_63	PHROG	phrog_160	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0259903_63	UniRef90	UniRef90_A0A316NZJ5	Thymidylate synthase	NA
UHGV-0259903_63	eggNOG-mapper	37659.JNLN01000001_gene1135	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0259903_63	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0259903_63	COG	COG0207	Thymidylate synthase	NA
UHGV-0259903_63	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0259903_64	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0259903_64	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0259903_64	UniRef90	UniRef90_A0A316P160	DNA polymerase I (Fragment)	NA
UHGV-0259903_64	eggNOG-mapper	1340829.S5Y5D9_9CAUD	DNA polymerase family A	NA
UHGV-0259903_64	PADLOC	drt-cluster58	DRT	DRT
UHGV-0259903_64	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0259903_64	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0259903_64	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0259903_64	Structural annotation	PF00476, PF03167, PF01612, MF_04101, MF_01956, NF004397, COG0749, COG1573	NA	NA
UHGV-0259903_65	KOfam	K16899	addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]	NA
UHGV-0259903_65	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0259903_65	UniRef90	UniRef90_A0A5H2TJR6	PDDEXK_1 domain-containing protein	NA
UHGV-0259903_65	eggNOG-mapper	706587.Desti_3464	PD-(D/E)XK nuclease superfamily	NA
UHGV-0259903_65	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0259903_65	COG	COG2887	RecB family exonuclease	NA
UHGV-0259903_65	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0259903_66	Pfam	PF13479	AAA domain	AAA_24