UHGV-0328676

Genome information

Genome length 41,175 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0328676
vOTU ID	vOTU-062812
vOTU representative	Yes
Source dataset	mMGE
Original genome ID	SRR7495929_141_159367_round1256~2975853
BioSample	SAMN08122037
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.46
Jumbo phage	No

Genome content
Genome length	41,175 bps
GC content	33.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.43%
Average CDS length	761.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0328676_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0328676_1	UniRef90	UniRef90_A0A1C6E832	HNH endonuclease	NA
UHGV-0328676_1	eggNOG-mapper	469616.FMAG_00566	HNH nucleases	NA
UHGV-0328676_1	Structural annotation	PF05766	NA	NA
UHGV-0328676_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0328676_2	UniRef90	UniRef90_R5X6Q8	Possible sigma factor	NA
UHGV-0328676_2	eggNOG-mapper	272562.CA_C0550	sigma factor activity	NA
UHGV-0328676_2	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0328676_2	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0328676_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0328676_2	Structural annotation	PF08281, MF_00245, TIGR01636, COG1595	NA	NA
UHGV-0328676_3	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0328676_3	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0328676_3	UniRef90	UniRef90_A0A1C6GV86	Phage/plasmid primase, P4 family, C-terminal domain	NA
UHGV-0328676_3	eggNOG-mapper	1304284.L21TH_2612	TIGRFAM phage plasmid primase, P4 family, C-terminal domain	NA
UHGV-0328676_3	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0328676_3	Pfam	PF19263	NA	DUF5906
UHGV-0328676_3	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0328676_3	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0328676_3	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0328676_3	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0328676_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0328676_4	UniRef90	UniRef90_A0A1C5YZ22	HTH_Tnp_Tc3_1 domain-containing protein	NA
UHGV-0328676_4	eggNOG-mapper	1540091.A0A0A0RNF3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0328676_4	Structural annotation	PF02796, TIGR04381, COG2771	NA	NA
UHGV-0328676_5	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0328676_5	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0328676_5	UniRef90	UniRef90_A0A0R3K0J3	Flavin-dependent thymidylate synthase	NA
UHGV-0328676_5	eggNOG-mapper	445973.CLOBAR_00072	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0328676_5	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0328676_5	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0328676_5	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0328676_5	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0328676_5	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0328676_7	PHROG	phrog_236	nucleotide kinase	other
UHGV-0328676_7	UniRef90	UniRef90_UPI001EF8FBB2	NA	NA
UHGV-0328676_7	eggNOG-mapper	673376.F2VHW0_9CAUD	NA	NA
UHGV-0328676_7	Pfam	PF11753	NA	DUF3310
UHGV-0328676_8	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0328676_8	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0328676_8	UniRef90	UniRef90_A0A1C6GWY9	DNA polymerase family B	NA
UHGV-0328676_8	eggNOG-mapper	445335.CBN_1360	DNA polymerase elongation subunit (Family B)	NA
UHGV-0328676_8	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0328676_8	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0328676_9	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0328676_9	UniRef90	UniRef90_UPI0009A7E289	NA	NA
UHGV-0328676_9	eggNOG-mapper	1123288.SOV_6c01550	NA	NA
UHGV-0328676_9	Pfam	PF05037	NA	DUF669
UHGV-0328676_9	Structural annotation	PF05037	NA	NA
UHGV-0328676_10	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0328676_10	UniRef90	UniRef90_UPI00052BC8F9	ERF family protein	NA
UHGV-0328676_10	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0328676_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0328676_11	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0328676_11	UniRef90	UniRef90_A0A1C6GW81	VRR-NUC domain	NA
UHGV-0328676_11	eggNOG-mapper	203119.Cthe_1738	VRR_NUC	NA
UHGV-0328676_11	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0328676_11	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0328676_12	PHROG	phrog_6244	NA	unknown function
UHGV-0328676_12	UniRef90	UniRef90_UPI0006C34CBC	siphovirus Gp157 family protein	NA
UHGV-0328676_12	eggNOG-mapper	1430331.EP10_02380	YqaJ viral recombinase family	NA
UHGV-0328676_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0328676_12	Structural annotation	PF05565	NA	NA
UHGV-0328676_13	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0328676_13	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0328676_13	UniRef90	UniRef90_A0A1C6GWE5	ATP-dependent helicase HepA	NA
UHGV-0328676_13	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0328676_13	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0328676_13	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0328676_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0328676_13	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0328676_13	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0328676_14	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0328676_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0328676_14	UniRef90	UniRef90_A0A446IBV6	XRE family transcriptional regulator	NA
UHGV-0328676_14	eggNOG-mapper	999411.HMPREF1092_03286	Helix-turn-helix XRE-family like proteins	NA
UHGV-0328676_14	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0328676_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0328676_14	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0328676_16	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0328676_16	UniRef90	UniRef90_H9A140	Homing HNH endonuclease	NA
UHGV-0328676_16	eggNOG-mapper	1147043.H9A140_9CAUD	HNH endonuclease	NA
UHGV-0328676_16	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0328676_20	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0328676_20	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0328676_20	UniRef90	UniRef90_UPI0005DE0931	ParM/StbA family protein	NA
UHGV-0328676_20	eggNOG-mapper	536233.CLO_0569	cell division	NA
UHGV-0328676_20	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0328676_20	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0328676_20	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0328676_23	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0328676_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0328676_23	UniRef90	UniRef90_T4V7T5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0328676_23	eggNOG-mapper	1235788.C802_00061	C-5 cytosine-specific DNA methylase	NA
UHGV-0328676_23	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0328676_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0328676_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0328676_24	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0328676_24	UniRef90	UniRef90_UPI0018A9C559	DnaD domain protein	NA
UHGV-0328676_24	eggNOG-mapper	130478.Q9B0F9_9CAUD	calcium ion binding	NA
UHGV-0328676_24	Structural annotation	PF13730, NF040939, COG5625	NA	NA
UHGV-0328676_25	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0328676_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0328676_25	UniRef90	UniRef90_A0A0U3EGR7	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0328676_25	eggNOG-mapper	1345695.CLSA_c30150	NA	NA
UHGV-0328676_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0328676_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0328676_25	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0328676_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0328676_28	PHROG	phrog_3088	amidase	lysis
UHGV-0328676_28	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-0328676_28	eggNOG-mapper	1396.DJ87_1663	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-0328676_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0328676_28	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0328676_28	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0328676_28	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA
UHGV-0328676_29	KOfam	K05996	cpt; carboxypeptidase T [EC:3.4.17.18]	NA
UHGV-0328676_29	PHROG	phrog_4722	zinc carboxypeptidase	other
UHGV-0328676_29	UniRef90	UniRef90_UPI00112D5B96	M14 family metallopeptidase	NA
UHGV-0328676_29	eggNOG-mapper	1406786.U5PVX3_9CAUD	metallocarboxypeptidase activity	NA
UHGV-0328676_29	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0328676_29	Pfam	PF00246	Zinc carboxypeptidase	Peptidase_M14
UHGV-0328676_30	eggNOG-mapper	1370121.AUWS01000008_gene5582	Parallel beta-helix repeats	NA
UHGV-0328676_30	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0328676_30	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0328676_31	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0328676_31	UniRef90	UniRef90_UPI00164A835E	phage tail protein	NA
UHGV-0328676_31	eggNOG-mapper	999411.HMPREF1092_03309	Prophage endopeptidase tail	NA
UHGV-0328676_31	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0328676_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0328676_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0328676_31	COG	COG4926	Phage-related protein	NA
UHGV-0328676_31	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0328676_32	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0328676_32	UniRef90	UniRef90_A0A1C6DMK9	Phage-related protein	NA
UHGV-0328676_32	eggNOG-mapper	195103.CPF_1575	tail component	NA
UHGV-0328676_32	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0328676_32	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0328676_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-0328676_32	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0328676_33	KOfam	K22804	SMC6; structural maintenance of chromosomes protein 6	NA
UHGV-0328676_33	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0328676_33	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0328676_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0328676_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0328676_33	Structural annotation	PF10145, PF05384, TIGR01760, TIGR02559, COG5280	NA	NA
UHGV-0328676_34	Structural annotation	PF11836	NA	NA
UHGV-0328676_35	PHROG	phrog_88	major tail protein	tail
UHGV-0328676_35	eggNOG-mapper	1414720.CBYM010000049_gene117	phage major tail protein, phi13 family	NA
UHGV-0328676_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0328676_36	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0328676_36	Structural annotation	PF05657	NA	NA
UHGV-0328676_37	UniRef90	UniRef90_UPI0018AAD4F8	HK97 gp10 family phage protein	NA
UHGV-0328676_37	Structural annotation	TIGR01725	NA	NA
UHGV-0328676_38	PHROG	phrog_25	head closure Hc1	connector
UHGV-0328676_38	UniRef90	UniRef90_A0A336Q665	Phage head-tail adaptor	NA
UHGV-0328676_38	eggNOG-mapper	536233.CLO_1365	Phage head-tail joining protein	NA
UHGV-0328676_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0328676_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0328676_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0328676_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0328676_43	UniRef90	UniRef90_A0A1C6F7A6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0328676_43	eggNOG-mapper	1423755.BAML01000004_gene383	Phage capsid family	NA
UHGV-0328676_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0328676_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0328676_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0328676_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0328676_44	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0328676_44	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0328676_44	UniRef90	UniRef90_A0A0Q7K8Z7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0328676_44	eggNOG-mapper	1124578.H0USW5_9CAUD	Clp protease	NA
UHGV-0328676_44	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0328676_44	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0328676_45	PHROG	phrog_12	portal protein	head and packaging
UHGV-0328676_45	UniRef90	UniRef90_A0A1C6E8K9	Phage portal protein, HK97 family	NA
UHGV-0328676_45	eggNOG-mapper	536232.CLM_2933	Phage portal protein, HK97 family	NA
UHGV-0328676_45	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0328676_45	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0328676_45	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0328676_45	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0328676_47	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0328676_47	UniRef90	UniRef90_A0A150FQX1	Terminase	NA
UHGV-0328676_47	eggNOG-mapper	1567010.A0A0A7RU73_9VIRU	Phage Terminase	NA
UHGV-0328676_47	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0328676_47	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0328676_47	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0328676_48	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0328676_48	UniRef90	UniRef90_UPI0018AA8382	phage terminase small subunit P27 family	NA
UHGV-0328676_48	eggNOG-mapper	1291050.JAGE01000001_gene2918	phage terminase small subunit	NA
UHGV-0328676_48	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0328676_48	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0328676_48	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0328676_48	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA