UHGV-0384159

Genome information

vOTU vOTU-001978

Genome length 34,967 bps

CDS count 47

Completeness 100.00% (complete)

geNomad score 0.9585

Prediction confidence Confident

Genome information
Genome ID	UHGV-0384159
vOTU ID	vOTU-001978
vOTU representative	Yes
Source dataset	COPSAC
Original genome ID	OTU_3205
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9585
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.06
Jumbo phage	No

Genome content
Genome length	34,967 bps
GC content	53.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	88.48%
Average CDS length	661.66 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0384159_1	eggNOG-mapper	1236504.HMPREF2132_11055	DNA restriction-modification system	NA
UHGV-0384159_1	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0384159_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0384159_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0384159_2	UniRef90	UniRef90_A0A2N8HC06	DNA methyltransferase	NA
UHGV-0384159_2	eggNOG-mapper	520999.PROVALCAL_00744	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0384159_2	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0384159_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0384159_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0384159_2	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0384159_3	PHROG	phrog_631	NA	unknown function
UHGV-0384159_3	eggNOG-mapper	273526.SMDB11_2635	NA	NA
UHGV-0384159_3	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0384159_4	PHROG	phrog_2509	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0384159_4	UniRef90	UniRef90_UPI0013FDAD61	DnaT-like ssDNA-binding domain-containing protein	NA
UHGV-0384159_4	eggNOG-mapper	1124654.G9L6A8_9CAUD	NA	NA
UHGV-0384159_4	Structural annotation	PF17948, PF09681, MF_01061, NF002770, TIGR01714	NA	NA
UHGV-0384159_5	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0384159_5	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0384159_5	UniRef90	UniRef90_A0A139TV45	AAA domain-containing protein	NA
UHGV-0384159_5	eggNOG-mapper	743299.Acife_0420	PFAM IstB domain protein ATP-binding protein	NA
UHGV-0384159_5	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0384159_5	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0384159_5	Structural annotation	PF01695, MF_01158, NF009043, COG1484	NA	NA
UHGV-0384159_6	PHROG	phrog_12058	NA	unknown function
UHGV-0384159_6	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0384159_6	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0384159_6	Pfam	PF04645	NA	DUF603
UHGV-0384159_7	eggNOG-mapper	697284.ERIC2_c26300	NA	NA
UHGV-0384159_8	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-0384159_8	UniRef90	UniRef90_UPI00156284D0	ubiquitin carboxyl-hydrolase	NA
UHGV-0384159_8	eggNOG-mapper	194699.Q775B8_BPBPP	NA	NA
UHGV-0384159_8	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0384159_8	Structural annotation	PF20901	NA	NA
UHGV-0384159_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0384159_9	UniRef90	UniRef90_A0A7G6DSM8	DEAD/DEAH box helicase family protein	NA
UHGV-0384159_9	eggNOG-mapper	580331.Thit_1395	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0384159_9	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0384159_9	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-0384159_10	PHROG	phrog_113	portal protein	head and packaging
UHGV-0384159_10	UniRef90	UniRef90_UPI001E2F3EDE	NA	NA
UHGV-0384159_10	eggNOG-mapper	278957.ABEA03000019_gene1900	Mu-like prophage protein gp29	NA
UHGV-0384159_10	Pfam	PF06074	NA	DUF935
UHGV-0384159_10	COG	COG4383	NA	NA
UHGV-0384159_10	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0384159_11	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-0384159_11	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-0384159_11	Structural annotation	PF10123, TIGR01543, COG4388	NA	NA
UHGV-0384159_13	eggNOG-mapper	278957.ABEA03000019_gene1905	NA	NA
UHGV-0384159_16	Structural annotation	PF20039	NA	NA
UHGV-0384159_19	Structural annotation	PF20873	NA	NA
UHGV-0384159_21	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0384159_21	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0384159_21	UniRef90	UniRef90_UPI000C9988AB	BACON domain-containing protein	NA
UHGV-0384159_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0384159_23	UniRef90	UniRef90_UPI001EDF593B	NA	NA
UHGV-0384159_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0384159_25	PHROG	phrog_435	endolysin	lysis
UHGV-0384159_25	UniRef90	UniRef90_A0A8F1HW68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0384159_25	eggNOG-mapper	1347392.CCEZ01000062_gene685	Ami_3	NA
UHGV-0384159_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0384159_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0384159_26	UniRef90	UniRef90_A0A8F1KK41	BACON domain-containing protein	NA
UHGV-0384159_30	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-0384159_31	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA
UHGV-0384159_33	KOfam	K14059	int; integrase	NA
UHGV-0384159_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0384159_33	UniRef90	UniRef90_A0A139TV62	Site-specific recombinase, phage integrase family	NA
UHGV-0384159_33	eggNOG-mapper	349741.Amuc_1378	Belongs to the 'phage' integrase family	NA
UHGV-0384159_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0384159_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0384159_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0384159_33	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0384159_34	UniRef90	UniRef90_A0A857Z8Y8	Homeobox domain-containing protein	NA
UHGV-0384159_34	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-0384159_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0384159_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0384159_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0384159_36	UniRef90	UniRef90_UPI000C9CD0E8	phage antirepressor	NA
UHGV-0384159_36	eggNOG-mapper	349741.Amuc_1367	BRO family, N-terminal domain	NA
UHGV-0384159_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0384159_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0384159_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0384159_36	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0384159_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0384159_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0384159_41	UniRef90	UniRef90_UPI0015E07057	recombinase RecT	NA
UHGV-0384159_41	eggNOG-mapper	644966.Tmar_0022	RecT family	NA
UHGV-0384159_41	Pfam	PF03837	RecT family	RecT
UHGV-0384159_41	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0384159_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0384159_42	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0384159_42	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0384159_42	UniRef90	UniRef90_A0A8F1HIJ3	YqaJ viral recombinase family protein	NA
UHGV-0384159_42	eggNOG-mapper	1269813.ATUL01000006_gene1835	Exonuclease	NA
UHGV-0384159_42	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0384159_42	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0384159_43	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-0384159_43	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0384159_43	UniRef90	UniRef90_A0A2N8HIX1	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0384159_43	eggNOG-mapper	367299.JOEE01000001_gene1963	NA	NA
UHGV-0384159_43	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-0384159_43	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0384159_44	Structural annotation	PF17516	NA	NA
UHGV-0384159_45	PHROG	phrog_3136	NA	unknown function
UHGV-0384159_45	UniRef90	UniRef90_UPI000C9A83B4	ASCH domain-containing protein	NA
UHGV-0384159_47	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0384159_47	UniRef90	UniRef90_A0A8F1HDK7	Class I SAM-dependent methyltransferase	NA
UHGV-0384159_47	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0384159_47	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0384159_47	Structural annotation	NF000468	NA	NA