vOTU-001978

Overview

No. of genomes 38

Genome length 34,967 bps

Completeness 100.00% (complete)

Host Akkermansia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-001978
Number of genomes	38
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00082 › vSUBFAM-00302 › vGENUS-00195 › vSUBGEN-34107 › vOTU-001978
Host taxonomy	Bacteria › Verrucomicrobiota › Verrucomicrobiae › Verrucomicrobiales › Akkermansiaceae › Akkermansia
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0384159
BioSample	NA
Genome length	34,967 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	47
CDS density	88.48%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0384159_1	eggNOG-mapper	1236504.HMPREF2132_11055	DNA restriction-modification system	NA
UHGV-0384159_1	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0384159_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0384159_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0384159_2	UniRef90	UniRef90_A0A2N8HC06	DNA methyltransferase	NA
UHGV-0384159_2	eggNOG-mapper	520999.PROVALCAL_00744	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0384159_2	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0384159_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0384159_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0384159_2	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0384159_3	PHROG	phrog_631	NA	unknown function
UHGV-0384159_3	eggNOG-mapper	273526.SMDB11_2635	NA	NA
UHGV-0384159_3	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0384159_4	PHROG	phrog_2509	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0384159_4	UniRef90	UniRef90_UPI0013FDAD61	DnaT-like ssDNA-binding domain-containing protein	NA
UHGV-0384159_4	eggNOG-mapper	1124654.G9L6A8_9CAUD	NA	NA
UHGV-0384159_4	Structural annotation	PF17948, PF09681, MF_01061, NF002770, TIGR01714	NA	NA
UHGV-0384159_5	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0384159_5	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0384159_5	UniRef90	UniRef90_A0A139TV45	AAA domain-containing protein	NA
UHGV-0384159_5	eggNOG-mapper	743299.Acife_0420	PFAM IstB domain protein ATP-binding protein	NA
UHGV-0384159_5	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0384159_5	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0384159_5	Structural annotation	PF01695, MF_01158, NF009043, COG1484	NA	NA
UHGV-0384159_6	PHROG	phrog_12058	NA	unknown function
UHGV-0384159_6	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0384159_6	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0384159_6	Pfam	PF04645	NA	DUF603
UHGV-0384159_7	eggNOG-mapper	697284.ERIC2_c26300	NA	NA
UHGV-0384159_8	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-0384159_8	UniRef90	UniRef90_UPI00156284D0	ubiquitin carboxyl-hydrolase	NA
UHGV-0384159_8	eggNOG-mapper	194699.Q775B8_BPBPP	NA	NA
UHGV-0384159_8	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0384159_8	Structural annotation	PF20901	NA	NA
UHGV-0384159_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0384159_9	UniRef90	UniRef90_A0A7G6DSM8	DEAD/DEAH box helicase family protein	NA
UHGV-0384159_9	eggNOG-mapper	580331.Thit_1395	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0384159_9	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0384159_9	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-0384159_10	PHROG	phrog_113	portal protein	head and packaging
UHGV-0384159_10	UniRef90	UniRef90_UPI001E2F3EDE	NA	NA
UHGV-0384159_10	eggNOG-mapper	278957.ABEA03000019_gene1900	Mu-like prophage protein gp29	NA
UHGV-0384159_10	Pfam	PF06074	NA	DUF935
UHGV-0384159_10	COG	COG4383	NA	NA
UHGV-0384159_10	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0384159_11	PHROG	phrog_328	head maturation protease	head and packaging
UHGV-0384159_11	Pfam	PF10123	Mu-like prophage I protein	Mu-like_Pro
UHGV-0384159_11	Structural annotation	PF10123, TIGR01543, COG4388	NA	NA
UHGV-0384159_13	eggNOG-mapper	278957.ABEA03000019_gene1905	NA	NA
UHGV-0384159_16	Structural annotation	PF20039	NA	NA
UHGV-0384159_19	Structural annotation	PF20873	NA	NA
UHGV-0384159_21	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0384159_21	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0384159_21	UniRef90	UniRef90_UPI000C9988AB	BACON domain-containing protein	NA
UHGV-0384159_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0384159_23	UniRef90	UniRef90_UPI001EDF593B	NA	NA
UHGV-0384159_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0384159_25	PHROG	phrog_435	endolysin	lysis
UHGV-0384159_25	UniRef90	UniRef90_A0A8F1HW68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0384159_25	eggNOG-mapper	1347392.CCEZ01000062_gene685	Ami_3	NA
UHGV-0384159_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0384159_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0384159_26	UniRef90	UniRef90_A0A8F1KK41	BACON domain-containing protein	NA
UHGV-0384159_30	Structural annotation	PF14594, TIGR01646, COG4379	NA	NA
UHGV-0384159_31	Structural annotation	PF18404, MF_01520, TIGR03469, COG1442	NA	NA
UHGV-0384159_33	KOfam	K14059	int; integrase	NA
UHGV-0384159_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0384159_33	UniRef90	UniRef90_A0A139TV62	Site-specific recombinase, phage integrase family	NA
UHGV-0384159_33	eggNOG-mapper	349741.Amuc_1378	Belongs to the 'phage' integrase family	NA
UHGV-0384159_33	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0384159_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0384159_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0384159_33	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0384159_34	UniRef90	UniRef90_A0A857Z8Y8	Homeobox domain-containing protein	NA
UHGV-0384159_34	eggNOG-mapper	349741.Amuc_1794	Peptidase S24-like	NA
UHGV-0384159_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0384159_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0384159_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0384159_36	UniRef90	UniRef90_UPI000C9CD0E8	phage antirepressor	NA
UHGV-0384159_36	eggNOG-mapper	349741.Amuc_1367	BRO family, N-terminal domain	NA
UHGV-0384159_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0384159_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0384159_36	COG	COG3617	Prophage antirepressor	NA
UHGV-0384159_36	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0384159_41	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0384159_41	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0384159_41	UniRef90	UniRef90_UPI0015E07057	recombinase RecT	NA
UHGV-0384159_41	eggNOG-mapper	644966.Tmar_0022	RecT family	NA
UHGV-0384159_41	Pfam	PF03837	RecT family	RecT
UHGV-0384159_41	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0384159_41	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0384159_42	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0384159_42	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0384159_42	UniRef90	UniRef90_A0A8F1HIJ3	YqaJ viral recombinase family protein	NA
UHGV-0384159_42	eggNOG-mapper	1269813.ATUL01000006_gene1835	Exonuclease	NA
UHGV-0384159_42	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0384159_42	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0384159_43	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-0384159_43	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0384159_43	UniRef90	UniRef90_A0A2N8HIX1	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0384159_43	eggNOG-mapper	367299.JOEE01000001_gene1963	NA	NA
UHGV-0384159_43	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-0384159_43	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0384159_44	Structural annotation	PF17516	NA	NA
UHGV-0384159_45	PHROG	phrog_3136	NA	unknown function
UHGV-0384159_45	UniRef90	UniRef90_UPI000C9A83B4	ASCH domain-containing protein	NA
UHGV-0384159_47	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0384159_47	UniRef90	UniRef90_A0A8F1HDK7	Class I SAM-dependent methyltransferase	NA
UHGV-0384159_47	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0384159_47	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0384159_47	Structural annotation	NF000468	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0384159	Yes	34,967 bps	53.93%	100.00%	0.9585
UHGV-0416554	No	34,268 bps	54.14%	100.00%	0.9603
UHGV-0384687	No	33,341 bps	53.10%	100.00%	0.9482
UHGV-0385402	No	32,766 bps	52.93%	100.00%	0.9410
UHGV-0073574	No	42,045 bps	52.11%	99.90%	0.9269
UHGV-0086480	No	36,781 bps	51.47%	99.90%	0.9493
UHGV-1489781	No	36,754 bps	53.03%	99.90%	0.9625
UHGV-0208902	No	34,374 bps	53.04%	99.90%	0.9521
UHGV-0164057	No	34,108 bps	53.41%	99.90%	0.9479
UHGV-2011150	No	34,036 bps	53.44%	99.90%	0.9548
UHGV-1970532	No	33,173 bps	52.95%	99.90%	0.9494
UHGV-1977576	No	32,831 bps	52.92%	98.97%	0.9414
UHGV-1422661	No	32,771 bps	52.95%	98.79%	0.9408
UHGV-0385630	No	32,466 bps	53.56%	97.87%	0.9574
UHGV-0386121	No	31,540 bps	53.41%	95.06%	0.9656
UHGV-1387972	No	31,394 bps	53.05%	94.62%	0.9538
UHGV-2133524	No	29,724 bps	54.53%	89.55%	0.9640
UHGV-1294090	No	29,589 bps	54.85%	88.56%	0.9580
UHGV-0101640	No	23,948 bps	55.37%	71.79%	0.9463
UHGV-1956824	No	23,590 bps	54.22%	71.13%	0.9580
UHGV-2212516	No	23,268 bps	54.24%	70.16%	0.9680
UHGV-1503337	No	21,200 bps	52.76%	63.92%	0.9501
UHGV-1426336	No	20,916 bps	54.35%	63.02%	0.9451
UHGV-0060809	No	20,672 bps	52.89%	62.35%	0.9532
UHGV-0278098	No	19,272 bps	54.35%	58.04%	0.9489
UHGV-1892873	No	17,987 bps	49.84%	54.17%	0.9157
UHGV-1400927	No	18,055 bps	55.49%	54.15%	0.9555
UHGV-1394620	No	17,865 bps	56.36%	53.84%	0.9713
UHGV-1475769	No	17,206 bps	54.52%	51.37%	0.9553
UHGV-1649016	No	15,740 bps	56.30%	47.45%	0.9573
UHGV-1978924	No	15,236 bps	56.76%	46.02%	0.9586
UHGV-1850039	No	15,130 bps	53.55%	45.61%	0.9566
UHGV-1794000	No	12,615 bps	50.66%	36.81%	0.9453
UHGV-1959798	No	11,114 bps	58.05%	33.57%	0.9511
UHGV-1694594	No	10,786 bps	55.60%	32.57%	0.9574
UHGV-2221834	No	10,763 bps	55.81%	32.50%	0.9491
UHGV-1950727	No	10,697 bps	51.74%	31.46%	0.9584
UHGV-1971310	No	10,284 bps	52.20%	31.02%	0.9596