UHGV-1545254

Genome information

vOTU vOTU-062096

Genome length 36,491 bps

CDS count 64

Completeness 98.31% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-1545254
vOTU ID	vOTU-062096
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0264478
BioSample	SAMEA3541506
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.09
Jumbo phage	No

Genome content
Genome length	36,491 bps
GC content	55.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.84%
Average CDS length	516.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1545254_2	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-1545254_2	PHROG	phrog_2104	NA	unknown function
UHGV-1545254_2	UniRef90	UniRef90_A0A414P8A6	Helix-turn-helix domain-containing protein	NA
UHGV-1545254_2	eggNOG-mapper	471875.RUMLAC_02311	Helix-turn-helix XRE-family like proteins	NA
UHGV-1545254_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1545254_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1545254_2	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-1545254_3	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1545254_4	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1545254_4	Structural annotation	PF12510	NA	NA
UHGV-1545254_5	PHROG	phrog_20016	NA	unknown function
UHGV-1545254_5	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1545254_5	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1545254_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1545254_6	PHROG	phrog_16490	NA	unknown function
UHGV-1545254_6	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1545254_7	PHROG	phrog_22984	NA	unknown function
UHGV-1545254_8	PHROG	phrog_21718	NA	unknown function
UHGV-1545254_8	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1545254_9	PHROG	phrog_3754	NA	unknown function
UHGV-1545254_9	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1545254_10	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-1545254_11	PHROG	phrog_608	holin	lysis
UHGV-1545254_11	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-1545254_11	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1545254_11	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1545254_11	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1545254_12	PHROG	phrog_37604	NA	unknown function
UHGV-1545254_12	eggNOG-mapper	585501.HMPREF6123_0817	NA	NA
UHGV-1545254_13	KOfam	K07273	acm; lysozyme	NA
UHGV-1545254_13	PHROG	phrog_291	endolysin	lysis
UHGV-1545254_13	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-1545254_13	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-1545254_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1545254_13	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1545254_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1545254_13	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1545254_15	PHROG	phrog_9534	head protein	head and packaging
UHGV-1545254_15	UniRef90	UniRef90_UPI0015C5CE46	tail fiber protein	NA
UHGV-1545254_15	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-1545254_16	PHROG	phrog_538	minor tail protein	tail
UHGV-1545254_16	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1545254_16	eggNOG-mapper	931626.Awo_c30930	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1545254_16	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1545254_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1545254_17	PHROG	phrog_36410	NA	unknown function
UHGV-1545254_17	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-1545254_17	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-1545254_17	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1545254_18	PHROG	phrog_23464	NA	unknown function
UHGV-1545254_18	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1545254_18	COG	COG5283	Phage-related tail protein	NA
UHGV-1545254_18	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-1545254_20	PHROG	phrog_885	major tail protein	tail
UHGV-1545254_20	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1545254_20	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1545254_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1545254_21	Structural annotation	PF11367	NA	NA
UHGV-1545254_22	PHROG	phrog_17977	NA	unknown function
UHGV-1545254_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1545254_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1545254_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1545254_24	PHROG	phrog_267	major head protein	head and packaging
UHGV-1545254_24	UniRef90	UniRef90_A0A3Q9B9E4	P22 coat protein-protein 5 domain protein	NA
UHGV-1545254_24	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-1545254_24	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-1545254_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1545254_25	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1545254_25	Structural annotation	PF06810	NA	NA
UHGV-1545254_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1545254_26	UniRef90	UniRef90_UPI000691EB78	HK97 gp10 family phage protein	NA
UHGV-1545254_26	eggNOG-mapper	1280689.AUJC01000007_gene3313	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1545254_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1545254_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1545254_27	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1545254_27	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-1545254_27	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1545254_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1545254_27	COG	COG2369	NA	NA
UHGV-1545254_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1545254_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-1545254_28	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1545254_28	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1545254_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1545254_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1545254_29	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1545254_29	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-1545254_29	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-1545254_29	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-1545254_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1545254_32	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1545254_32	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-1545254_32	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-1545254_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1545254_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1545254_32	COG	COG0863	DNA modification methylase	NA
UHGV-1545254_32	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1545254_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1545254_33	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1545254_33	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-1545254_33	eggNOG-mapper	985665.HPL003_12065	DNA methylase	NA
UHGV-1545254_33	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1545254_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1545254_33	COG	COG0863	DNA modification methylase	NA
UHGV-1545254_33	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1545254_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1545254_34	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-1545254_34	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1545254_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1545254_43	UniRef90	UniRef90_UPI0006891852	AP2 domain-containing protein	NA
UHGV-1545254_43	eggNOG-mapper	1122149.BACN01000055_gene1942	NA	NA
UHGV-1545254_44	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1545254_44	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-1545254_44	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-1545254_44	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-1545254_44	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-1545254_45	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-1545254_45	UniRef90	UniRef90_A0A3D5I9W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1545254_45	eggNOG-mapper	657322.FPR_23140	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1545254_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1545254_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1545254_46	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-1545254_48	PHROG	phrog_18306	NA	unknown function
UHGV-1545254_48	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-1545254_49	PHROG	phrog_16304	NA	unknown function
UHGV-1545254_49	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-1545254_49	eggNOG-mapper	755731.Clo1100_1616	Phage replisome organizer	NA
UHGV-1545254_49	Pfam	PF19808	NA	DUF6291
UHGV-1545254_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1545254_49	Structural annotation	PF19808	NA	NA
UHGV-1545254_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1545254_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1545254_50	UniRef90	UniRef90_A0A1C5PRE8	Single-stranded DNA-binding protein	NA
UHGV-1545254_50	eggNOG-mapper	500632.CLONEX_02624	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1545254_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1545254_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1545254_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1545254_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1545254_50	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1545254_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1545254_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1545254_51	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-1545254_51	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1545254_51	Pfam	PF03837	RecT family	RecT
UHGV-1545254_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1545254_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1545254_51	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1545254_52	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1545254_52	UniRef90	UniRef90_A0A3D3XZF3	YqaJ domain-containing protein	NA
UHGV-1545254_52	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-1545254_52	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1545254_52	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1545254_52	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1545254_52	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1545254_62	eggNOG-mapper	1408323.JQKK01000005_gene152	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-1545254_63	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-1545254_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1545254_63	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-1545254_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1545254_64	PHROG	phrog_95	integrase	integration and excision
UHGV-1545254_64	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-1545254_64	eggNOG-mapper	1378168.N510_03180	resolvase	NA
UHGV-1545254_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1545254_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1545254_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1545254_64	Structural annotation	PF00239, NF041201, COG1961	NA	NA