vOTU-011799

Overview

vOTU representative UHGV-0020041

No. of genomes 6

Genome length 89,102 bps

Completeness 93.75% (high-quality)

Host Prevotella

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-011799
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00068 › vSUBFAM-00038 › vGENUS-00519 › vSUBGEN-01369 › vOTU-011799
Host taxonomy	Bacteria › Bacteroidota › Bacteroidia › Bacteroidales › Bacteroidaceae › Prevotella
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020041
BioSample	SAMEA4766056
Genome length	89,102 bps
CheckV completeness	93.75% (high-quality)
CheckV contamination	0.00%
CDS count	109
CDS density	88.71%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020041_1	Structural annotation	TIGR01603, COG5437	NA	NA
UHGV-0020041_2	Structural annotation	PF05065, PF18998, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0020041_3	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0020041_3	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0020041_3	UniRef90	UniRef90_A0A2L2WN07	Signal peptide peptidase SppA, 36K type	NA
UHGV-0020041_3	eggNOG-mapper	1236504.HMPREF2132_01855	serine-type peptidase activity	NA
UHGV-0020041_3	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0020041_3	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0020041_3	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-0020041_4	Structural annotation	PF11550, COG5437	NA	NA
UHGV-0020041_7	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0020041_7	UniRef90	UniRef90_A0A353E7W6	MazG domain-containing protein	NA
UHGV-0020041_7	eggNOG-mapper	1236504.HMPREF2132_01780	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0020041_7	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0020041_7	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0020041_7	Structural annotation	TIGR03188, COG1694	NA	NA
UHGV-0020041_8	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0020041_8	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0020041_8	UniRef90	UniRef90_A0A345BP42	Thymidylate synthase complementing protein	NA
UHGV-0020041_8	eggNOG-mapper	1236504.HMPREF2132_01775	thymidylate synthase (FAD) activity	NA
UHGV-0020041_8	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0020041_8	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0020041_8	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0020041_9	KOfam	K00942	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	NA
UHGV-0020041_9	PHROG	phrog_1815	guanylate kinase	other
UHGV-0020041_9	UniRef90	UniRef90_A0A354WXC5	Guanylate kinase	NA
UHGV-0020041_9	eggNOG-mapper	742727.HMPREF9447_00732	Guanylate kinase	NA
UHGV-0020041_9	Pfam	PF00625	Guanylate kinase	Guanylate_kin
UHGV-0020041_9	COG	COG0194	Guanylate kinase	NA
UHGV-0020041_9	Structural annotation	PF00625, MF_00328, TIGR03263, COG0194	NA	NA
UHGV-0020041_10	UniRef90	UniRef90_A0A2L2WND9	Primase C terminal 2	NA
UHGV-0020041_10	eggNOG-mapper	1236504.HMPREF2132_01765	Primase C terminal 2 (PriCT-2)	NA
UHGV-0020041_10	PADLOC	drt-cluster64	DRT	DRT
UHGV-0020041_10	Pfam	PF08800	BT4734-like, N-terminal domain	BT4734-like_N
UHGV-0020041_10	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0020041_10	Structural annotation	PF08800, NF040562	NA	NA
UHGV-0020041_11	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0020041_11	UniRef90	UniRef90_A0A2L2WS53	PhageMin_Tail domain-containing protein	NA
UHGV-0020041_11	eggNOG-mapper	1236504.HMPREF2132_01670	tail tape measure protein, TP901 family	NA
UHGV-0020041_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0020041_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0020041_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0020041_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0020041_13	Structural annotation	PF20765	NA	NA
UHGV-0020041_14	UniRef90	UniRef90_UPI001C2BD57F	phage holin family protein	NA
UHGV-0020041_14	eggNOG-mapper	457424.BFAG_02443	NA	NA
UHGV-0020041_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0020041_14	Structural annotation	TIGR01593	NA	NA
UHGV-0020041_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0020041_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0020041_17	UniRef90	UniRef90_A0A2L2WN54	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0020041_17	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0020041_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0020041_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0020041_17	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0020041_19	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0020041_19	UniRef90	UniRef90_A0A096B9T1	Conjugal transfer protein	NA
UHGV-0020041_19	eggNOG-mapper	1236504.HMPREF2132_01885	DNA restriction-modification system	NA
UHGV-0020041_19	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0020041_19	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0020041_21	eggNOG-mapper	1002367.HMPREF0673_02207	NA	NA
UHGV-0020041_21	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0020041_26	Structural annotation	PF08863	NA	NA
UHGV-0020041_28	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0020041_28	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0020041_28	UniRef90	UniRef90_A0A7X6VW07	Beta sliding clamp	NA
UHGV-0020041_28	eggNOG-mapper	755732.Fluta_2407	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0020041_28	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0020041_28	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0020041_28	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0020041_28	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0020041_31	PHROG	phrog_35807	NA	unknown function
UHGV-0020041_31	eggNOG-mapper	357276.EL88_12625	RNA polymerase activity	NA
UHGV-0020041_31	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0020041_31	Structural annotation	PF14902	NA	NA
UHGV-0020041_32	UniRef90	UniRef90_A0A096AGU9	FHA domain-containing protein	NA
UHGV-0020041_32	eggNOG-mapper	1236504.HMPREF2132_01700	DNA primase activity	NA
UHGV-0020041_32	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0020041_32	Structural annotation	PF05272, PF01807, MF_00974, MF_00016, NF005477, COG3378, COG0358	NA	NA
UHGV-0020041_34	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020041_34	UniRef90	UniRef90_A0A353E5D6	NA	NA
UHGV-0020041_34	eggNOG-mapper	1236504.HMPREF2132_01690	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0020041_34	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-0020041_34	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0020041_34	Structural annotation	PF16473, MF_00157, TIGR01298, COG5018	NA	NA
UHGV-0020041_36	Structural annotation	COG3655	NA	NA
UHGV-0020041_37	Structural annotation	PF17457	NA	NA
UHGV-0020041_40	UniRef90	UniRef90_A0A6G1TZW9	Replication initiation protein	NA
UHGV-0020041_40	eggNOG-mapper	1284775.HMPREF1640_05070	Initiator RepB protein	NA
UHGV-0020041_40	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0020041_40	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0020041_40	Structural annotation	PF20964, PF07112, NF010305, COG5527	NA	NA
UHGV-0020041_41	Structural annotation	PF12502, MF_02248	NA	NA
UHGV-0020041_43	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0020041_43	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0020041_43	UniRef90	UniRef90_A0A353E5C8	AAA_31 domain-containing protein	NA
UHGV-0020041_43	eggNOG-mapper	1236504.HMPREF2132_02105	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-0020041_43	Pfam	PF13614	AAA domain	AAA_31
UHGV-0020041_43	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0020041_43	Structural annotation	PF13614, MF_00533, NF041283, COG1192	NA	NA
UHGV-0020041_45	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0020041_45	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0020041_45	UniRef90	UniRef90_A0A7C4P4A2	DNA ligase	NA
UHGV-0020041_45	eggNOG-mapper	1123248.KB893386_gene1852	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0020041_45	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-0020041_45	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0020041_45	Structural annotation	PF01653, PF03120, MF_01588, NF005932, COG0272	NA	NA
UHGV-0020041_46	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0020041_49	Structural annotation	PF12857	NA	NA
UHGV-0020041_57	eggNOG-mapper	1433126.BN938_1801	NA	NA
UHGV-0020041_57	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0020041_60	UniRef90	UniRef90_A0A7J0A8P0	HTH-type transcriptional regulator SinR	NA
UHGV-0020041_60	eggNOG-mapper	1268240.ATFI01000020_gene152	NA	NA
UHGV-0020041_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020041_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020041_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0020041_61	eggNOG-mapper	585543.HMPREF0969_03349	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0020041_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0020041_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020041_64	PHROG	phrog_1501	NA	unknown function
UHGV-0020041_64	UniRef90	UniRef90_R6EVM2	NA	NA
UHGV-0020041_64	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-0020041_64	Pfam	PF18925	NA	DUF5675
UHGV-0020041_64	Structural annotation	PF18925	NA	NA
UHGV-0020041_65	UniRef90	UniRef90_F3PDX9	Conserved domain protein	NA
UHGV-0020041_65	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-0020041_66	UniRef90	UniRef90_UPI001F36DCAA	NA	NA
UHGV-0020041_66	eggNOG-mapper	1122985.HMPREF1991_01560	NA	NA
UHGV-0020041_66	Pfam	PF14301	NA	DUF4376
UHGV-0020041_66	Structural annotation	PF14301	NA	NA
UHGV-0020041_67	Structural annotation	PF12866, PF13620, PF20942, NF040788, COG2351	NA	NA
UHGV-0020041_68	PHROG	phrog_38044	NA	unknown function
UHGV-0020041_68	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0020041_68	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0020041_68	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0020041_68	Structural annotation	PF00629, PF20073, NF033675	NA	NA
UHGV-0020041_73	Pfam	PF20459	NA	DUF6712
UHGV-0020041_73	Structural annotation	PF20459	NA	NA
UHGV-0020041_74	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0020041_74	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0020041_74	UniRef90	UniRef90_A0A255TPS1	Methyltransferase	NA
UHGV-0020041_74	eggNOG-mapper	483215.BACFIN_05771	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0020041_74	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0020041_74	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0020041_74	COG	COG0863	DNA modification methylase	NA
UHGV-0020041_74	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0020041_75	eggNOG-mapper	1235803.C825_03414	NA	NA
UHGV-0020041_75	Structural annotation	PF05136, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0020041_76	PHROG	phrog_2087	NA	unknown function
UHGV-0020041_76	eggNOG-mapper	985665.HPL003_12540	NA	NA
UHGV-0020041_77	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0020041_77	UniRef90	UniRef90_R6U473	Gp142	NA
UHGV-0020041_77	eggNOG-mapper	1327935.A0A060AD14_9CAUD	NA	NA
UHGV-0020041_77	Structural annotation	COG1704	NA	NA
UHGV-0020041_78	KOfam	K03395	aac3-I; aminoglycoside 3-N-acetyltransferase I [EC:2.3.1.60]	NA
UHGV-0020041_78	UniRef90	UniRef90_A0A6I1S5I8	GNAT family N-acetyltransferase	NA
UHGV-0020041_78	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0020041_78	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0020041_78	Structural annotation	PF13673, MF_02018, NF000487, COG3153	NA	NA
UHGV-0020041_79	Structural annotation	COG5475	NA	NA
UHGV-0020041_86	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0020041_86	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0020041_86	UniRef90	UniRef90_A0A353E5E4	Cytosine-specific methyltransferase	NA
UHGV-0020041_86	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-0020041_86	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0020041_86	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0020041_86	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0020041_86	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0020041_86	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0020041_91	PHROG	phrog_8684	NA	unknown function
UHGV-0020041_91	UniRef90	UniRef90_UPI001F45D98B	YopX family protein	NA
UHGV-0020041_91	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0020041_91	Pfam	PF09643	YopX protein	YopX
UHGV-0020041_91	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0020041_93	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0020041_93	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0020041_93	UniRef90	UniRef90_A0A413CCX6	RNA-splicing ligase RtcB	NA
UHGV-0020041_93	eggNOG-mapper	1089548.KI783301_gene2001	tRNA-splicing ligase RtcB	NA
UHGV-0020041_93	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0020041_93	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0020041_93	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0020041_94	PHROG	phrog_1374	NA	unknown function
UHGV-0020041_94	Pfam	PF10269	Transmembrane Fragile-X-F protein	Tmemb_185A
UHGV-0020041_99	PHROG	phrog_874	NA	unknown function
UHGV-0020041_99	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0020041_99	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0020041_105	Structural annotation	PF10628	NA	NA
UHGV-0020041_108	KOfam	K11921	cynR; LysR family transcriptional regulator, cyn operon transcriptional activator	NA
UHGV-0020041_108	PHROG	phrog_3736	NA	unknown function
UHGV-0020041_108	UniRef90	UniRef90_A0A353E8E6	HTH lysR-type domain-containing protein	NA
UHGV-0020041_108	eggNOG-mapper	1121890.AUDO01000009_gene38	Transcriptional regulator	NA
UHGV-0020041_108	Pfam	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family	HTH_1
UHGV-0020041_108	Pfam	PF03466	LysR substrate binding domain	LysR_substrate
UHGV-0020041_108	COG	COG0583	DNA-binding transcriptional regulator, LysR family	NA
UHGV-0020041_108	Structural annotation	PF03466, PF00126, MF_01233, NF040786, COG0583	NA	NA
UHGV-0020041_109	eggNOG-mapper	1095752.HMPREF9969_2503	Rhodopirellula transposase DDE domain	NA
UHGV-0020041_109	COG	COG3335	Transposase	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0020041	Yes	89,102 bps	47.81%	93.75%	0.9765
UHGV-1469217	No	89,907 bps	48.05%	94.97%	0.9795
UHGV-1450653	No	54,404 bps	48.29%	57.52%	0.9779
UHGV-1766156	No	42,476 bps	48.33%	44.94%	0.9785
UHGV-1746640	No	28,755 bps	47.51%	29.32%	0.9800
UHGV-1709507	No	27,853 bps	47.87%	28.61%	0.9803