vOTU-014013

Overview

No. of genomes 11

Genome length 53,853 bps

Completeness 99.90% (high-quality)

Host CAG-41 sp900066215

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-014013
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00102 › vSUBFAM-00821 › vGENUS-01198 › vSUBGEN-12363 › vOTU-014013
Host taxonomy	Bacteria › Firmicutes A › Clostridia › UBA1381 › UBA1381 › CAG-41 › CAG-41 sp900066215
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-1341133
BioSample	SAMN00792052
Genome length	53,853 bps
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
CDS count	64
CDS density	95.21%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1341133_1	PHROG	phrog_10089	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UHGV-1341133_1	UniRef90	UniRef90_A0A3D0X8D0	Helicase ATP-binding domain-containing protein (Fragment)	NA
UHGV-1341133_1	eggNOG-mapper	397288.C806_03713	helicase C-terminal domain protein	NA
UHGV-1341133_1	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1341133_1	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1341133_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1341133_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1341133_3	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1341133_3	PHROG	phrog_329	minor tail protein	tail
UHGV-1341133_3	UniRef90	UniRef90_A0A355JE00	Peptidase C51 domain-containing protein	NA
UHGV-1341133_3	eggNOG-mapper	1487921.DP68_07190	NLP P60 protein	NA
UHGV-1341133_3	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1341133_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1341133_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1341133_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1341133_4	PHROG	phrog_435	endolysin	lysis
UHGV-1341133_4	UniRef90	UniRef90_A0A1C5N460	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1341133_4	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1341133_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1341133_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1341133_4	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1341133_5	PHROG	phrog_918	NA	unknown function
UHGV-1341133_5	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-1341133_5	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-1341133_5	Pfam	PF19791	NA	DUF6275
UHGV-1341133_5	Structural annotation	PF19791	NA	NA
UHGV-1341133_6	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1341133_7	PHROG	phrog_37799	NA	unknown function
UHGV-1341133_7	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-1341133_7	eggNOG-mapper	272563.CD630_06610	Bacteriophage holin family	NA
UHGV-1341133_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1341133_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1341133_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1341133_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1341133_8	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-1341133_8	PHROG	phrog_819	tail protein	tail
UHGV-1341133_8	eggNOG-mapper	1536769.P40081_01140	NA	NA
UHGV-1341133_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1341133_10	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-1341133_10	Structural annotation	PF01696, NF000420, COG3420	NA	NA
UHGV-1341133_12	Structural annotation	PF09144, NF038393	NA	NA
UHGV-1341133_15	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1341133_15	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-1341133_16	Structural annotation	PF20387	NA	NA
UHGV-1341133_18	PHROG	phrog_14242	major head protein	head and packaging
UHGV-1341133_18	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-1341133_18	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-1341133_18	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-1341133_18	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-1341133_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-1341133_20	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-1341133_20	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1341133_21	UniRef90	UniRef90_A0A7X6VKT0	C2H2-type domain-containing protein	NA
UHGV-1341133_21	Structural annotation	PF21169	NA	NA
UHGV-1341133_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1341133_22	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1341133_22	UniRef90	UniRef90_A0A355JD48	Terminase_3 domain-containing protein	NA
UHGV-1341133_22	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-1341133_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1341133_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1341133_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1341133_23	Structural annotation	PF06056, COG2963	NA	NA
UHGV-1341133_27	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-1341133_27	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-1341133_29	Structural annotation	PF02796, COG2771	NA	NA
UHGV-1341133_31	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-1341133_31	UniRef90	UniRef90_A0A416CVN3	RNA_pol_A_CTD domain-containing protein	NA
UHGV-1341133_31	eggNOG-mapper	1410638.JHXJ01000004_gene2091	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-1341133_31	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-1341133_31	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-1341133_32	PHROG	phrog_6802	NA	unknown function
UHGV-1341133_32	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-1341133_33	PHROG	phrog_419	NA	unknown function
UHGV-1341133_33	UniRef90	UniRef90_UPI001CC11C4F	PGDYG domain-containing protein	NA
UHGV-1341133_33	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-1341133_34	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1341133_34	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1341133_34	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-1341133_34	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-1341133_34	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1341133_34	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1341133_34	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1341133_34	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-1341133_34	Structural annotation	PF14354, COG3478	NA	NA
UHGV-1341133_38	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-1341133_38	PHROG	phrog_37855	NA	unknown function
UHGV-1341133_38	UniRef90	UniRef90_A0A645DV58	Stage 0 sporulation protein A	NA
UHGV-1341133_38	eggNOG-mapper	642492.Clole_1756	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-1341133_38	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1341133_38	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1341133_38	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1341133_39	PHROG	phrog_4400	NA	unknown function
UHGV-1341133_39	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-1341133_39	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-1341133_39	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-1341133_40	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1341133_40	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-1341133_40	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1341133_41	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1341133_41	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1341133_41	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-1341133_41	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-1341133_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1341133_41	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1341133_41	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1341133_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1341133_41	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-1341133_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1341133_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1341133_42	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-1341133_42	eggNOG-mapper	1291050.JAGE01000001_gene1719	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1341133_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1341133_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1341133_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1341133_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1341133_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1341133_44	PHROG	phrog_398	NA	unknown function
UHGV-1341133_44	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-1341133_44	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-1341133_44	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1341133_44	Structural annotation	PF16784	NA	NA
UHGV-1341133_45	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1341133_45	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1341133_45	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-1341133_45	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1341133_45	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1341133_45	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1341133_45	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1341133_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1341133_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1341133_46	UniRef90	UniRef90_UPI001D034282	recombinase RecT	NA
UHGV-1341133_46	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-1341133_46	Pfam	PF03837	RecT family	RecT
UHGV-1341133_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1341133_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1341133_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1341133_47	PHROG	phrog_674	NA	unknown function
UHGV-1341133_47	UniRef90	UniRef90_A0A416D4U8	NA	NA
UHGV-1341133_47	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1341133_47	Pfam	PF07083	NA	DUF1351
UHGV-1341133_47	Structural annotation	PF07083	NA	NA
UHGV-1341133_48	Structural annotation	PF09943	NA	NA
UHGV-1341133_50	PHROG	phrog_1029	NA	unknown function
UHGV-1341133_50	UniRef90	UniRef90_M1QIB9	Phage-related protein	NA
UHGV-1341133_50	eggNOG-mapper	1078085.HMPREF1210_01165	NA	NA
UHGV-1341133_50	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1341133_51	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1341133_51	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1341133_51	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1341133_52	Structural annotation	PF17574	NA	NA
UHGV-1341133_53	Structural annotation	PF10922	NA	NA
UHGV-1341133_57	PHROG	phrog_3150	NA	unknown function
UHGV-1341133_57	eggNOG-mapper	580331.Thit_1411	NA	NA
UHGV-1341133_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1341133_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1341133_59	UniRef90	UniRef90_A0A542AKC5	DNA-binding XRE family transcriptional regulator	NA
UHGV-1341133_59	eggNOG-mapper	218284.CCDN010000001_gene1646	Helix-turn-helix XRE-family like proteins	NA
UHGV-1341133_59	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1341133_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1341133_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1341133_59	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1341133_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1341133_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1341133_60	UniRef90	UniRef90_R6MT43	DNA-binding helix-turn-helix protein	NA
UHGV-1341133_60	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-1341133_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1341133_60	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1341133_60	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-1341133_61	PHROG	phrog_87	metallo-protease	other
UHGV-1341133_61	UniRef90	UniRef90_R6NN10	Peptidase_M78 domain-containing protein	NA
UHGV-1341133_61	eggNOG-mapper	536232.CLM_2576	IrrE N-terminal-like domain	NA
UHGV-1341133_61	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1341133_61	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1341133_61	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1341133_63	eggNOG-mapper	1120998.AUFC01000015_gene1569	competence protein COMEC	NA
UHGV-1341133_63	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1341133_64	KOfam	K14059	int; integrase	NA
UHGV-1341133_64	PHROG	phrog_1	integrase	integration and excision
UHGV-1341133_64	UniRef90	UniRef90_R6MY37	Putative integrase	NA
UHGV-1341133_64	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-1341133_64	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1341133_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1341133_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1341133_64	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1341133	Yes	53,853 bps	37.52%	99.90%	0.9748
UHGV-1534046	No	54,198 bps	37.52%	99.90%	0.9750
UHGV-1534920	No	50,637 bps	37.82%	94.42%	0.9749
UHGV-0128949	No	36,690 bps	37.85%	68.39%	0.9756
UHGV-0085600	No	32,262 bps	38.53%	60.12%	0.9642
UHGV-0117223	No	31,796 bps	38.44%	59.27%	0.9762
UHGV-1475968	No	31,796 bps	38.44%	59.27%	0.9762
UHGV-1606489	No	22,090 bps	39.13%	41.17%	0.9764
UHGV-1602273	No	18,119 bps	39.24%	33.78%	0.9755
UHGV-2054325	No	16,974 bps	39.57%	31.64%	0.9724
UHGV-1727939	No	13,279 bps	35.21%	24.76%	0.9639